Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60427g00028 ATGGAGATTCACTACAGTAGCAGTTACTTCGAAAGGCGACCCATAATCAGGTCGAAGGCCCCAGCTGCTAAATGGGTTAAAGAATGGGTTCCCCAAGATGTTGTAGCCACTGGGGGGAAATGCATGCTCTTAAGATGGGTTAGAGAGGATGCCTTGAAGGCATTGCAGGAAAAGGCAAAAGAACCAGCAGTGCCTGAACCAGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTACGAAGGATGTGGAAAGACGTTCATAGATGCCGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGTGGAAAGGCCTTCTCGCTGGATTTCAACCTAAGGTCTCACATGAAAACACATTCGCAAGAGAACTATCATATCTGTCCATACCCAGATTGCGGGAAGAGATACGCTCACGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAACGCAGCAGTAGAGGTGCCGAAGTATACTCCACCTTTGGAAAGACAACCAAAAGCTATTAAACATTCCGGTGCGGCATATGGTTCTGCATCGTCAGATCGCCCCTATGCATGCCCTTATGAAGGTTGTGAAAAAGCCTATATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTTTGATGAAAATGCAGAGCATGCTCACGCTAATGTTGATAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGGGTGAAACGATCAAATGGTAAAATTCAGAAGCAAAGTAAGCCAAAACCAAACCTTAAGTTGCCTCCTCCTCCCAAAATCGCCAAACGGAAAGCACCACCGCATGCTCCTGCCACAATAGCTGTAACAAAAAAACCTTGGCCTGGGAAAGAGGAGGCTTATGACGAAGAAGACAGCGAAGAAACAGAAGAGGATCGCGACAATGTTGAAGATGGTTGGAGATATGGTGGCAACAATGACGACGACGATGATGAAGAAACAGAATATGAAGACTGA 1035 0.4502 MEIHYSSSYFERRPIIRSKAPAAKWVKEWVPQDVVATGGKCMLLRWVREDALKALQEKAKEPAVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPKYTPPLERQPKAIKHSGAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMFDENAEHAHANVDNEMDEASDQDAYGVKRSNGKIQKQSKPKPNLKLPPPPKIAKRKAPPHAPATIAVTKKPWPGKEEAYDEEDSEETEEDRDNVEDGWRYGGNNDDDDDEETEYED 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60427g00028 344 MobiDBLite consensus disorder prediction 270 284 - -
Stsc60427g00028 344 ProSitePatterns Zinc finger C2H2 type domain signature. 201 224 IPR013087 -
Stsc60427g00028 344 FunFam zinc finger transcription factor YY1 77 102 - -
Stsc60427g00028 344 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Stsc60427g00028 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Stsc60427g00028 344 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 118 - -
Stsc60427g00028 344 FunFam Zinc finger transcription factor YY1 174 241 - -
Stsc60427g00028 344 MobiDBLite consensus disorder prediction 244 344 - -
Stsc60427g00028 344 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Stsc60427g00028 344 FunFam Zinc finger protein 410 104 131 - -
Stsc60427g00028 344 Gene3D Classic Zinc Finger 177 241 - -
Stsc60427g00028 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Stsc60427g00028 344 SUPERFAMILY beta-beta-alpha zinc fingers 194 222 IPR036236 -
Stsc60427g00028 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 229 IPR013087 -
Stsc60427g00028 344 Gene3D Classic Zinc Finger 135 165 - -
Stsc60427g00028 344 Gene3D Classic Zinc Finger 103 134 - -
Stsc60427g00028 344 MobiDBLite consensus disorder prediction 330 344 - -
Stsc60427g00028 344 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Stsc60427g00028 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Stsc60427g00028 344 MobiDBLite consensus disorder prediction 306 320 - -
Stsc60427g00028 344 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Stsc60427g00028 344 Pfam Zinc finger, C2H2 type 106 130 IPR013087 -
Stsc60427g00028 344 ProSitePatterns Zinc finger C2H2 type domain signature. 138 161 IPR013087 -
Stsc60427g00028 344 Gene3D Classic Zinc Finger 77 102 - -
Stsc60427g00028 344 FunFam zinc finger transcription factor YY1 133 164 - -
Stsc60427g00028 344 SUPERFAMILY beta-beta-alpha zinc fingers 116 162 IPR036236 -
Stsc60427g00028 344 SMART c2h2final6 199 224 IPR013087 -
Stsc60427g00028 344 SMART c2h2final6 136 160 IPR013087 -
Stsc60427g00028 344 SMART c2h2final6 106 130 IPR013087 -
Stsc60427g00028 344 SMART c2h2final6 77 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60427g00028 Stsc-Chr60427 177188 180015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60427g00028 10 329 C2H2 Transcription Factor Family AT4G06634 59.128 4.99e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60427g00028 zf-C2H2 0.008 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60427g00028 - - gmx:100811480 476.478