Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60427g00007 ATGGGGAACTGCTTGTGTAGGTTGGAATCTTCAGATTATAGAGTCTCTTCTAATGCAAAGTCAGATTCAACAACAAGAGAGGAAAACCAGGCAATGAAACAAAGGAATGATATTAGTAGGTTACCAACAAGTCCTGAGGAAGTGGAAAACCTATTACTACGGCGCGATTCGGCTTCGAATCCGTTGATTGTATTCACTTATGATGAGCTAAAGATAATAACTGGAAATTTTAGGCCGGATCGTGTGTTGGGGGGTGGCGGATTCGGAAGTGTATATAAAGGTTTCATCTCTGAGGAGTTAAGAGAGGGTCTTCCTACTCTTCCTGTGGCTGTTAAGGTTCATGATGGTGATAACAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTATCGCATCCGAATCTAGTCAAATTAATCGGATACTGCTGTGAAGATGAACATAGGGTGCTAATTTATGAGTTTATGGCCAGGGGAAGTGTTGAAAACAATTTGTTCTCCAAAATTTTGCTTCCATTGCCGTGGTCCATAAGAATGAAGATTGCATTTGGAGCTGCAAAAGGACTCGCGTTTCTTCACGAGGCGGAGAAACCTGTCATCTATCGCGATTTCAAAACATCAAATATTTTATTGGACCTGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCTAAAGATGGGCCAGTCGGAGACAAATCCCATGTTTCGACTCGCATAATGGGAACATATGGCTATGCTGCACCTGAGTACATAATGACAGGCCATTTGACCCCGAGAAGTGATGTTTACAGCTTTGGTGTTGTTCTTCTCGAACTTCTGACCGGAAGAAAATCACTAGACAAGTTAAGGCCAGCAAGAGAACAGAACCTTGCAGATTGGGCTCTTCCTCTGCTGAAGGAGAAGAAGAAGCTTCTAAACATCATAGATCCAAGGCTTGAAGCTGATTATCCAATAAAGGGTGTTCACAAGGCTGCAATGCTTGCTTACCATTGCTTGAACCGCAATCCAAAGGCGCGGCCGCTAATGCGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCACACAATGAGATCCCTATCCAAAAAACATTGACCATAATCAGTGAAGTTTCTGAGGCTGATTTGAAGAAGGGGAAAATTCAGAATCACTGA 1170 0.4316 MGNCLCRLESSDYRVSSNAKSDSTTREENQAMKQRNDISRLPTSPEEVENLLLRRDSASNPLIVFTYDELKIITGNFRPDRVLGGGGFGSVYKGFISEELREGLPTLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKILLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLADWALPLLKEKKKLLNIIDPRLEADYPIKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAHNEIPIQKTLTIISEVSEADLKKGKIQNH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60427g00007 389 MobiDBLite consensus disorder prediction 16 41 - -
Stsc60427g00007 389 ProSiteProfiles Protein kinase domain profile. 77 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60427g00007 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Stsc60427g00007 389 PANTHER OS01G0588500 PROTEIN-RELATED 29 359 - -
Stsc60427g00007 389 ProSitePatterns Protein kinases ATP-binding region signature. 83 112 IPR017441 GO:0005524
Stsc60427g00007 389 Gene3D Transferase(Phosphotransferase) domain 1 161 378 - -
Stsc60427g00007 389 Gene3D Phosphorylase Kinase; domain 1 43 160 - -
Stsc60427g00007 389 SUPERFAMILY Protein kinase-like (PK-like) 56 355 IPR011009 -
Stsc60427g00007 389 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Stsc60427g00007 389 FunFam Serine/threonine-protein kinase BIK1 44 160 - -
Stsc60427g00007 389 Pfam Protein tyrosine and serine/threonine kinase 80 355 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60427g00007 Stsc-Chr60427 58521 61895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60427g00007 64 355 Glycoside Hydrolase AT3G07070 51.864 1.86e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60427g00007 PK_Tyr_Ser-Thr 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60427g00007 - - gmx:100775722 664.07