Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60426g00036 ATGGCTGCTTCACTCTGGAGACCTCGCTTAGCTTCTTCTCTTCTCTCCAATCTCACCAACTCTCTTCGCCGTTTCTCTTCCGATGTTATTGCAGACACAAACGCTCATAATGCTCGAGAGAGCATGATGAATCAGATGATGTATTCCGATATAAATTCTCAAATTGGGAGTTGTATGCCATTATCTTCTATGCGAATCGGAACTATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTGGTTAGAGCAGCTGGAACTTGTGCGAAAATCCTGAAAGAACCCACATCAAAGTACTGTCTTATCCAGCTCCCCTCAGGTGTTAAAAAAATGATTGATTCTCGTTGCAGGGCCACCGTTGGTACTGTCTCAAATCCAAGCCACGGAGATAAGAAGCTTAGGAAGGCTGGTCATAGCAGATGGCTTGGCCGGAGACCAGTTGTTCGAGGAGTAGCCATGAATCCAGTAGACCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGACTAGTGGTCGGTGGGGAAAAGGATCTCGTACTCCTTGGGGCAAGCCGACTAAGAGTGGATTCAAGACCGGACCCCTAAAACGTAGGAAGTAG 603 0.476 MAASLWRPRLASSLLSNLTNSLRRFSSDVIADTNAHNARESMMNQMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKYCLIQLPSGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKTSGRWGKGSRTPWGKPTKSGFKTGPLKRRK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60426g00036 200 ProSitePatterns Ribosomal protein L2 signature. 148 159 IPR022671 GO:0003735|GO:0005840|GO:0006412
Stsc60426g00036 200 Pfam Ribosomal Proteins L2, C-terminal domain 54 184 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc60426g00036 200 MobiDBLite consensus disorder prediction 155 200 - -
Stsc60426g00036 200 SUPERFAMILY Translation proteins SH3-like domain 55 189 IPR008991 -
Stsc60426g00036 200 SMART Ribosomal_L2_C_2 53 186 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc60426g00036 200 FunFam 50S ribosomal protein L2 126 200 - -
Stsc60426g00036 200 NCBIfam 50S ribosomal protein L2 49 196 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Stsc60426g00036 200 PANTHER RIBOSOMAL PROTEIN L2 47 198 IPR002171 GO:0003735|GO:0005840|GO:0006412
Stsc60426g00036 200 Gene3D - 44 125 IPR014722 -
Stsc60426g00036 200 Gene3D Ribosomal protein L2, domain 3 126 200 IPR014726 -
Stsc60426g00036 200 FunFam 60S ribosomal protein L2, mitochondrial 49 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60426g00036 Stsc-Chr60426 297006 299216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60426g00036 38 165 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.066 4.56e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60426g00036 - - gmx:100792418 325.865