Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60426g00035 ATGGGTGTCGACTACTACAAGATTCTCGGTGTCGATAAAACCGCTAACGACGATGATCTCAAGAAGGCGTATCGAAAGCTTGCAATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAACGACGCTGAAGCCAAATTCAAGCAAATCTCCGAAGCCTATGATGTTTTGAGTGATTCTCAGAAGCGAGCAGTTTATGATCAGTATGGTGAGGAAGGGCTGAAGGGGCAGGTACCACCACCAGGTGCTGGTAGTTTTTCGGGTGGCAGCGATGGTAGTTCGGCTAATTTCCGGTTCAACCCGAGAAGTGCAGATGATATATTTTCAGAGTTCTTTGGTTTCAACAGTCCATTTGGTGGAATGGGGGACATGGGTGGTCGTGGTGGCGCATCCAGGGGCGGCATGTTTGGTGATGATATCTTTGCTCAGTTTAGGGGTGGAGCTGGAGAGGGCTCTGCTCATATGCCAAGGAAAAGTGCACCAATAGAGAAAACATTGCAATGTAGCTTGGAGGATTTGTATAAAGGGACAACAAAAAAGATGAAGATTTCAAGGGATGTTACTGATGCGAGTGGAAGGCCCACCACAGTAGAGGAAATCCTTACAATTGAGATCAAACCAGGTTGGAAGAAAGGAACAAAAATAACCTTTCCAGAGAAGGGAAATGAGCAAAGAGGACTTATCCCGGCAGACCTTGTCTTCATCATCGACGAGAAGCCACATAGTGTCTTCAAGAGGGATGGCAATGATCTTGTTGTCACCCAGAAGGTACCCCTTGTAGATGCTTTAACTGGTTACACAGCGCAGCTGACGACCCTTGACAGCCGAAACCTTACAATCCCCATTAATTCGATCATTAGTCCGACGTACGAAGAAGTTGTTAAAGGAGAGGGTATGCCAATTCCCAAAGAACCCTCCAAGAAAGGTAACTTGAGAATCAAGTTTAACATCAAGTTTCCGTCGAGGCTTACATCAGATCAGAAAAGCGGCATTAAGCGATTATTGACATCATATACCTCTACATGA 1026 0.4571 MGVDYYKILGVDKTANDDDLKKAYRKLAMKWHPDKNPNNKNDAEAKFKQISEAYDVLSDSQKRAVYDQYGEEGLKGQVPPPGAGSFSGGSDGSSANFRFNPRSADDIFSEFFGFNSPFGGMGDMGGRGGASRGGMFGDDIFAQFRGGAGEGSAHMPRKSAPIEKTLQCSLEDLYKGTTKKMKISRDVTDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGLIPADLVFIIDEKPHSVFKRDGNDLVVTQKVPLVDALTGYTAQLTTLDSRNLTIPINSIISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSDQKSGIKRLLTSYTST 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60426g00035 341 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Stsc60426g00035 341 SMART dnaj_3 3 62 IPR001623 -
Stsc60426g00035 341 FunFam DnaJ subfamily B member 13 241 321 - -
Stsc60426g00035 341 CDD DnaJ 4 59 IPR001623 -
Stsc60426g00035 341 FunFam Dnaj homolog subfamily b member 158 239 - -
Stsc60426g00035 341 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc60426g00035 341 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc60426g00035 341 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc60426g00035 341 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc60426g00035 341 CDD DnaJ_C 160 323 - -
Stsc60426g00035 341 SUPERFAMILY Chaperone J-domain 3 118 IPR036869 -
Stsc60426g00035 341 Pfam DnaJ domain 4 67 IPR001623 -
Stsc60426g00035 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 329 IPR008971 GO:0006457|GO:0051082
Stsc60426g00035 341 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc60426g00035 341 Gene3D - 241 321 - -
Stsc60426g00035 341 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Stsc60426g00035 341 MobiDBLite consensus disorder prediction 72 94 - -
Stsc60426g00035 341 Gene3D DnaJ domain 3 122 IPR036869 -
Stsc60426g00035 341 Gene3D - 161 239 - -
Stsc60426g00035 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 241 IPR008971 GO:0006457|GO:0051082
Stsc60426g00035 341 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc60426g00035 341 FunFam DnaJ subfamily B member 13 3 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60426g00035 Stsc-Chr60426 289812 293087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60426g00035 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.25e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60426g00035 K09510 - nnu:104602593 555.058