Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60426g00033 ATGGGTTCCAGTCGCTCAGATAATGGCAAAGAACGCCTACGCTGGACACAACAACTCCATGATCGCTTTGTGGAGTCTGTAAATAGGCTTGGGGGCCCTGATAGGGCAACACCAAAGGGAATATTGAAGGGGATGAAGGCCATGGGTGTTTCTGATCTCAGCATTTATCACGTCAAAAGTCACTTGCAGAAATACCGGCTCTCCAAATTGATTCCAGAGTCTACCTCAAAAGCAAAGCTTGAGAAGAGGAGCATATCCAATACAATGCCAAATTTCAGCTCAACATGTGCTCTTCAGCTAAAGGAAATTCTTCAAATGCAGAGGGAGGTGCGAAAACGCTTGAGTGATCAAGTAGAGGTTCAGAGAAGGTTGAAGCAAAAAATTGAAGCACAAGACAAATACCTTGATAGAATTGGACAAAGCCATCAAAGCAGAACAACAATCACTAGAAAACCTTGCAAGCCATCACTTGGTTCTAATAATAATAATAATAAACATCTACCTTCTCTATCTGAGGAATCAGAATCTGTTCTTGAGACACACCCTGAAGATGAAGAAGAAGAGAATCAATCATTTTTCAAAAGACAAAGGGTAGCAATAGATGAGGATTATGTTTTTCCATCAAGTTTTGATGAACTTGAACTTGTTGGACCATCCACCACCACAGAATTCATTGATGATCAAACATGGAATCTTTCATGGAGTCAACTTGCAGCAGCATGTGATCAATCACCTTTGATGCCAGGATTCTTATTATAA 759 0.4058 MGSSRSDNGKERLRWTQQLHDRFVESVNRLGGPDRATPKGILKGMKAMGVSDLSIYHVKSHLQKYRLSKLIPESTSKAKLEKRSISNTMPNFSSTCALQLKEILQMQREVRKRLSDQVEVQRRLKQKIEAQDKYLDRIGQSHQSRTTITRKPCKPSLGSNNNNNKHLPSLSEESESVLETHPEDEEEENQSFFKRQRVAIDEDYVFPSSFDELELVGPSTTTEFIDDQTWNLSWSQLAAACDQSPLMPGFLL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60426g00033 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 70 IPR017930 -
Stsc60426g00033 252 MobiDBLite consensus disorder prediction 140 175 - -
Stsc60426g00033 252 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
Stsc60426g00033 252 Coils Coil 111 131 - -
Stsc60426g00033 252 MobiDBLite consensus disorder prediction 135 191 - -
Stsc60426g00033 252 Pfam MYB-CC type transfactor, LHEQLE motif 99 139 IPR025756 -
Stsc60426g00033 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 183 IPR044848 GO:0003700
Stsc60426g00033 252 NCBIfam myb-like DNA-binding domain, SHAQKYF class 10 68 IPR006447 GO:0003677
Stsc60426g00033 252 Gene3D - 9 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60426g00033 Stsc-Chr60426 276654 281926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60426g00033 3 135 G2-like Transcription Factor Family AT4G28610 47.794 1.26e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60426g00033 Myb_CC_LHEQLE 6.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60426g00033 - - aip:107639556 391.349