Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60426g00029 ATGAGTTATTCTGAAACTAATCAGCGTGACGAAGAAGCTTCCAAGATTCCACCGTTGCCAACCGATGCACCTAATGATGCAGATGATGATGATGTAAAATTGAGGTCTAGGGACCAAAGAGAGGCTCTCCAGGGTGAGCCCAAGTGTATCATATGTGGCCGTTATGGTGAGTATATCTGCGATGAAACTGATGATGATGTTTGCAGTTTGGAATGTAAACAATTACTACTAGGCAGAATTAATAAATCCTTGCCTCCTGATGGAGGAGTTCTTCTGCCACCTAAAAAACTACCTGTAGCTGATGAGTGCTTTTATGTTAGAGATAATGATTGTGAATCAGGAACTTCATCTTTAGCTAGAGATCAGGTTGAATTGCTTAGAAAGAAACTTGAAATTCATGTGAAGGGTGATGTAGTGGCACCAGCTTTGTCATTTGCTTCATGCAGTCTCCCTAAAAAGCTCCTCCAGAATATAGAAGCGGCAGGATATGAAATGCCTACACCTGTTCAGATGCAAGCAATCCCTGCCGCTATGACGGGAAAAAGCTCGCTTGTTCTGGCTGACACAGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATAGTTTCTCGATGTGCAAGTCACCGCCTTATATTTGCTTCAAATAAGAAGCCTTTAGCTATGGTGTTAACACCTACCAGAGAGCTTTGTATACAGGTTGAAGAGCATGCAAAATTGCTCGGAAAGGGGTTACCATTTAAAACTGCACTTGTGGTTGGTGGTGAAGCCATGGCTGGACAACTCTATCGCATTCAGCAAGGAGTGGAACTCATTGTGGGAACACCGGGAAGGCTTGTTGATCTTTTAACAAAGCATGAGATTGACTTAGATAATGTGAAGACTTTTGTTTTGGATGAAGTGGACTGCATGCTTCAAAGGGGTTTCCGAGATCAGGTCACGCAGATATACAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGGCGAACTCACTTGTGAGTGGTGCATCGGTTATATCAGTTGGGAAGGTGAATAGCCCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCGAAGCAAAAGAAGCAGAAGCTGTTCGATATATTACTGAGTAAGCAACATTTTAAGCCACCTGCTGTAGTGTATGTGGACTCCAGACTTGGAGCAGATCTTCTGGCAAATGCAATAAAAGTTGCCACAGGAANNNNNNNNNNGGCTAATTCAATTCATGGAGAGAAGTCCATGAAGGAAAGAAGAGAAATAATGCAGTCGCTTTTGGTGGGTGAGGTTCCGGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGACCTATTGGGTGTAAGGCAGGTAATTGTGTTTGACATGCCAAATTCTATTAAGGAGTACATACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTCAAGCTATAGTTTTTGTCAATGAGGAGAACAAGAACATCTTTGCTGATCTAGTTGATGTATTAAAACTTGGTGGAGCAGCTGTTCCCCGGGAGCTAGCCAATTCACGGTATACCACTGGGTTTTTTCCTGGTGGCAAGGGTTCAAAGAAGCGAAAGCATAGATAA 1632 0.4289 MSYSETNQRDEEASKIPPLPTDAPNDADDDDVKLRSRDQREALQGEPKCIICGRYGEYICDETDDDVCSLECKQLLLGRINKSLPPDGGVLLPPKKLPVADECFYVRDNDCESGTSSLARDQVELLRKKLEIHVKGDVVAPALSFASCSLPKKLLQNIEAAGYEMPTPVQMQAIPAAMTGKSSLVLADTGSGKSASFLIPIVSRCASHRLIFASNKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDNVKTFVLDEVDCMLQRGFRDQVTQIYRALSQPQVLMYSATMSNDLEKMANSLVSGASVISVGKVNSPNKAVKQVAIWVESKQKKQKLFDILLSKQHFKPPAVVYVDSRLGADLLANAIKVATGXXXXANSIHGEKSMKERREIMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYIHQIGRASRMGEEGQAIVFVNEENKNIFADLVDVLKLGGAAVPRELANSRYTTGFFPGGKGSKKRKHR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60426g00029 543 Gene3D - 28 84 - -
Stsc60426g00029 543 SMART helicmild6 402 486 IPR001650 -
Stsc60426g00029 543 Pfam HIT zinc finger 47 73 IPR007529 -
Stsc60426g00029 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 500 IPR027417 -
Stsc60426g00029 543 Pfam DEAD/DEAH box helicase 167 337 IPR011545 GO:0003676|GO:0005524
Stsc60426g00029 543 CDD SF2_C_DEAD 361 495 - -
Stsc60426g00029 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 349 IPR014001 -
Stsc60426g00029 543 MobiDBLite consensus disorder prediction 1 38 - -
Stsc60426g00029 543 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 117 511 - -
Stsc60426g00029 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 350 IPR027417 -
Stsc60426g00029 543 FunFam DEAD-box ATP-dependent RNA helicase 41 29 86 - -
Stsc60426g00029 543 Gene3D - 351 527 IPR027417 -
Stsc60426g00029 543 Pfam Helicase conserved C-terminal domain 376 486 IPR001650 -
Stsc60426g00029 543 SMART ultradead3 162 364 IPR014001 -
Stsc60426g00029 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 525 IPR001650 -
Stsc60426g00029 543 Gene3D - 109 350 IPR027417 -
Stsc60426g00029 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60426g00029 Stsc-Chr60426 196585 199803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60426g00029 137 506 Eukaryotic Initiation Factors Gene Family AT3G19760 29.067 1.07e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60426g00029 K19466 - gmx:100781473 811.986