Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60426g00028 ATGATCCGTGCGGAGCTTGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGCTCTGGGAAATCATCTCCAACACCATGAAGGAAAAAGGTTACAATAGAAGCGCTGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGTTACAAGGGATGTGAAACGATGGAGGCGGAAGCAATGAGGCAGCAATTCCCATTCTACAACGAGCTTCAAGCTATTTTCACCGATAGAATGCAGAGGATGCTTTGGGCTGAAGCCGAAGGAGGCGGCGGAGGAGGAGGAGGAGGAGGTTCGTCTAATAATAAGAAGAAAGCGGCAGTGCAGGTTTCATCGGACGAGGAAGAAGAGGAGGAGAGTGAATTAGGAGGAGATTCACAACAAAAGATTAAAAAGAAAAGGATAAAGAAGGTTAAGAGGATGGAAAATAGTAGTAGTGATAGTAATAATTTGAAGCGTTTGAAGGGGATTCTGGAGGAGTTTATGAGGCAACAGATGCAGATGGAGGCGCAATGGATGGAGGCGTTCGAGGCGAGGGAGAATGATAGGAGGTTGAAGGAGTTGGAATGGAGGCAAACAATGGAGGCTTTGGAGAATCAGAGGATATTGATGGAGCAGAGATGGAGGGAGAGTGAAGAACAAAGGAGGATTAGAGATGAAGCTAGGGCTGATAAGAGAGATGCTCTTATCACTGCACTTCTCAACAAGCTTTCAAGACAAGATCATCAATAA 732 0.4577 MIRAELDQTFMETKRNKQLWEIISNTMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEAEAMRQQFPFYNELQAIFTDRMQRMLWAEAEGGGGGGGGGGSSNNKKKAAVQVSSDEEEEEESELGGDSQQKIKKKRIKKVKRMENSSSDSNNLKRLKGILEEFMRQQMQMEAQWMEAFEARENDRRLKELEWRQTMEALENQRILMEQRWRESEEQRRIRDEARADKRDALITALLNKLSRQDHQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60426g00028 243 PANTHER FI21293P1 2 240 - -
Stsc60426g00028 243 Coils Coil 151 171 - -
Stsc60426g00028 243 CDD GT1 1 54 - -
Stsc60426g00028 243 Coils Coil 194 214 - -
Stsc60426g00028 243 Gene3D - 1 52 - -
Stsc60426g00028 243 ProSiteProfiles Myb-like domain profile. 5 47 IPR001005 -
Stsc60426g00028 243 MobiDBLite consensus disorder prediction 86 149 - -
Stsc60426g00028 243 FunFam Zinc finger and SCAN domain-containing 20 1 52 - -
Stsc60426g00028 243 Pfam Myb/SANT-like DNA-binding domain 5 74 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60426g00028 Stsc-Chr60426 162686 163927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60426g00028 2 239 Trihelix Transcription Factor Family AT2G38250 56.723 3.84e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc60426g00028 Myb_DNA-bind_4 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60426g00028 - - aip:107637926 354.369