LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60425g00041	ATGGCACAGCCTGCAGAAATATCATCATCTTCCTTCACTGGTGAGTGGACTTATGATGTTTTCCTCAGTTTTAGAGGCAAAGATACCCGCCACAACTTCACTGGTAATCTCTATCATTCTTTGGATCAAAAGGGAATAGACACCTTCATGGATGATGAAGGCCTTAGAAAGGGAGAAGAAATTAAGCCATCCCTTCTCAAAGCAATTCAAGAATCTAGGACTGCCGTAGTTGTTTTCTCTGAAAACTATGCATCCTCGACTTACTGTTTGGACGAACTTGTCGCAATTCTTGAGCATTTGAAAGCAGAAGGTCGACTTGTTTGGCCTATTTTTTATGATGTGGATCCATCCGTTGTTCGACATCAGACAGGTAGTTATGCAGAAGCTTTATCAAAACATGAAGGAAGATACCAAGATGACAAGGGCAAAGTGCAAAAATGGAGGCATGCTTTGCTTGAAGCAGCTAATTTGTCTGGTTGGCATTTCAAACAGGGGTTTCAAACAGAATATAAGTTTATTACAAACATCGTTAGCATTGTCTCCGAAAAGCTCAATAACACTCCTTTACATGTTGCTGACAACCCAGTTGGGCTAGGATCACCAGTGCTTCAAGTGAAATCTATTACGGGAATTGGCTCTAATGAGAGAGTTAAGATGATTGGAATTTATGGGATTGGTGGAATAGGTAAAACAACAATTGCACGAGCTGCGTATAATCTGCTTGCAGACCAATTTGATGGTTTGTGTTTTCTTGCAGACATTAGAGAAAAGGCTAAGCATGGCCTTGAAAAAATGCAGGAAACACTACTTTCTGAAATACTTGGGGAGAAAGAAATTAAGATTGGATGTGTCGATAAAGGGATTCCACTAATAAAAAGGAGGCTCCAAAGAAAGAAGGTCCTTTTGGTTATTGATGATGTGGACAATCTTAAGCAGTTAAAGGCAATTGCTGGAGCATGTGATTGGTTTGGCTCTGGTAGTCGAATTATTATCACGTCTAGAGACAAGCATCTGTTAAGTGCTCATGGGGTGAGAGAGTTTTATGAGGTTGAAGAGTTAAGGAAAAAAGATGCACTTGAATTGTTCAGTTGGAATGCCTTCAAAAGCAACAAAGTTAATCCAGGTTATGCAAAAATTTCAAACCGTGTCCTGTTGTATGCCGGTGGCCTTCCTTTGGCTCTGCAAGTAATTGGTTCCAACTTGTATAATAGAAGCATTGATGAATGGAAGTCTGCGTTAGATAAATATGAAAGATTTCCTAATAAAGAGATTCATGAAATACTTAAGGTGAGTTATGATGGTTTGGAGGAAGATGAGAAGAATATTTTCCTTGACATTGCTTGTTTCTTCAACAAATACAAGCTGTCCTATGTCAAATGGATGCTACATGCGCGTGGCTTCTACCCAGAACATGGCATTCAAGTTTTGGTTGACAAATCTCTTATGAGTATTGATAGAAATGATTGCCTAAGAATGCATGACTTGATTCAGGACATGGGTAGAGAAATTGTTAGACAGGAATCTACTTCTGAGCCTGGCAAACGTAGTAGATTGTGGTTAGATGAGGATATTTTTCATGTTTTGCAAAATGAGACGGGAACTGAAAAAGTCGAAGTCATAATTTTGTACTCAAGCAGACAGAAAGAAGTGTATTGGAATGGGAATGCATTCCAGAAGATGAGGAATCTTAGAGTTCTTATTGTTGGGGATGCATACTTTCCTACAGGTCCTAAAAATCTCCCAAATAGTTTACGGGTTTTGGATTGGCTTGGATATCCATCAACTTCTTTACCATCTGGTTTTAATCCGAGTGAGCCCTCCATACTCAGTGTGATTAGTAGTTGTCTTAGATTTGACAAACCACTCAAGATGTTTTGTTCTCTGAGTTTTATGAATTTTGAAGATTGTAAAATGTTAAGACAAGTACCCAGCCTTTCTGGACTCCCAAACTTAAGGGCATTGTGTCTTGATAACTGCACCAATTTAGTTAAAGTTCATGATTCTGTTGGATTTCTTAGGAAACTCATTTTGTTGAGTGCCCAAGGATGCTCCATGCTCCAAAGTTTTGTAAGTGCCATCAATTTGCCATCTCTTGAGACTCTAGACCTAAGTTGGTGCACAAGTCTTGAGAGCTTTCCAGAAGTACTAGGAAAAATGGAAAACATCCAAGAGGTGTTTATTGATTACAAGCTCAGAGGATATCGATTGTATGAACCATACAAAGTTGAAGAAGTCATGATGTCAAAAGTGTTTGTGTCTCCCTCTTTAAATGTGCATAGAGCTTTGCTTCCCTTTGCCAAAGCATATTGTATAACAATAAGTGACTACAATGTCATCCAAGAATATCCACTGACCAACATCGCTTTGCCTAAATCACATGTCCATGTTGGGAGTGGATCATCTGTTAAGTTCTGGTTTCGTGAAAGATTTCCGGAGGTCACAGTCGTGCTTATCGCAGAACCTTTATACATTGACCTCGTGCATAATTCAATGTTTGAGTTCAGATACTCAGTGCTCATCAATGGAATCAACCAATTCAGTTCTTCATGTGACTACATGATTTCTGAGACAAGAGAGATGCAGCCATTGTGTCTGTCTGTTTTTTCCGGGGAACCTTCAATCCCTGATTGA	2631	0.3926	MAQPAEISSSSFTGEWTYDVFLSFRGKDTRHNFTGNLYHSLDQKGIDTFMDDEGLRKGEEIKPSLLKAIQESRTAVVVFSENYASSTYCLDELVAILEHLKAEGRLVWPIFYDVDPSVVRHQTGSYAEALSKHEGRYQDDKGKVQKWRHALLEAANLSGWHFKQGFQTEYKFITNIVSIVSEKLNNTPLHVADNPVGLGSPVLQVKSITGIGSNERVKMIGIYGIGGIGKTTIARAAYNLLADQFDGLCFLADIREKAKHGLEKMQETLLSEILGEKEIKIGCVDKGIPLIKRRLQRKKVLLVIDDVDNLKQLKAIAGACDWFGSGSRIIITSRDKHLLSAHGVREFYEVEELRKKDALELFSWNAFKSNKVNPGYAKISNRVLLYAGGLPLALQVIGSNLYNRSIDEWKSALDKYERFPNKEIHEILKVSYDGLEEDEKNIFLDIACFFNKYKLSYVKWMLHARGFYPEHGIQVLVDKSLMSIDRNDCLRMHDLIQDMGREIVRQESTSEPGKRSRLWLDEDIFHVLQNETGTEKVEVIILYSSRQKEVYWNGNAFQKMRNLRVLIVGDAYFPTGPKNLPNSLRVLDWLGYPSTSLPSGFNPSEPSILSVISSCLRFDKPLKMFCSLSFMNFEDCKMLRQVPSLSGLPNLRALCLDNCTNLVKVHDSVGFLRKLILLSAQGCSMLQSFVSAINLPSLETLDLSWCTSLESFPEVLGKMENIQEVFIDYKLRGYRLYEPYKVEEVMMSKVFVSPSLNVHRALLPFAKAYCITISDYNVIQEYPLTNIALPKSHVHVGSGSSVKFWFRERFPEVTVVLIAEPLYIDLVHNSMFEFRYSVLINGINQFSSSCDYMISETREMQPLCLSVFSGEPSIPD	876

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60425g00041	876	Gene3D	-	352	436	IPR042197	-
	Stsc60425g00041	876	ProSiteProfiles	TIR domain profile.	16	184	IPR000157	GO:0007165
	Stsc60425g00041	876	SUPERFAMILY	"Winged helix" DNA-binding domain	422	529	IPR036390	-
	Stsc60425g00041	876	Gene3D	-	188	345	IPR027417	-
	Stsc60425g00041	876	SMART	till_3	17	157	IPR000157	GO:0007165
	Stsc60425g00041	876	Gene3D	-	12	187	IPR035897	-
	Stsc60425g00041	876	SUPERFAMILY	L domain-like	540	728	-	-
	Stsc60425g00041	876	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	729	IPR044974	GO:0006952
	Stsc60425g00041	876	SMART	AAA_5	216	357	IPR003593	GO:0016887
	Stsc60425g00041	876	Gene3D	Ribonuclease Inhibitor	549	732	IPR032675	-
	Stsc60425g00041	876	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	446	IPR027417	-
	Stsc60425g00041	876	PRINTS	Disease resistance protein signature	387	401	-	-
	Stsc60425g00041	876	PRINTS	Disease resistance protein signature	219	234	-	-
	Stsc60425g00041	876	PRINTS	Disease resistance protein signature	693	709	-	-
	Stsc60425g00041	876	PRINTS	Disease resistance protein signature	294	308	-	-
	Stsc60425g00041	876	Pfam	TIR domain	18	189	IPR000157	GO:0007165
	Stsc60425g00041	876	Pfam	NB-ARC domain	217	433	IPR002182	GO:0043531
	Stsc60425g00041	876	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	160	IPR035897	-
	Stsc60425g00041	876	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60425g00041	Stsc-Chr60425	301623	304657	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60425g00041	12	727	WRKY Transcription Factor Family	AT4G12020	32.791	9.05e-91	313

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60425g00041	-		-	ahf:112736348	1473.76