Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60425g00040 ATGGAAGCAGCTACAGCAACTACTTCTTCCTCTCAGCCTCGCCAGAGAAAGCAGAAGAGAAAGCGTGCCGCCGCGTTGGCGAGTGACCCCGAACTCGAGCGACTTAACTCGCTACCTTGGAACCCTTCGTTTCCACGAAACAACGACGAAGATGATAACAACAATGGCAACGACCCCTTTGCTATGCTCGCCACTGGCTCCAACGAGCTCGAAGGTGGTTTTCTCTCACTCGAGGAGATCGACGAGGCTGATTACGCCTTTTCCTTCCCTGAACCTCAAACCAATGGGAATAAGAACCAGAAGAAGAAGAGTAAGCTCGATGAGAGTGTGAAAGAAGAAGAGAAGAAGGAAGAGGAAGATGATGGAGTTGGCGGCGGCGGCGGCGGTAGCGATGAGGTTGAAGTGAAGAAGGAAAATAAAAAAGATAAGAAGAAGAAGAAGAAGAAAAAGAAGACAAAGAAGAATAAGAAGAAGAAGGAGGAGGAAAAGGAAGAGGAAGCGGTTACCGAAAGCCAGAGTGTTGAGGAGCTAGATACTGGTCTATATACTGATGCGAAGGATGATGATGGTGTTGGGGAAGAAGACTTTGATGAAACTGAATTTTACGCATGGAACGAGTTGAGGCTTCATCCTTTGCTAATGAAAGCAATTTACAAGCTTGGTTTCAAGGAACCGACACCAATTCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTGGCATTCGGTTTGCCCATTTTGCAGCGTATTTTGGAGGAACGAGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTGAAGAGCCAGAAAAATATGCTCCTACAGGAATTTTGAGGGCTCTCATTATTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCCATAGCCAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGAGGGATTTTAGCCGAAAAGCAGGAGAGACTTTTAAAATCAAGGCCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAGGTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCTTTCTTTGTCCTTGACGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCGATAATTGACATGCTTCCCATGTCAAATATCTCCGCTGAGGATAATTCTCAACATGCCCAAAATTGTGTTACAGTTTCAAGCTACCGAAGAAAGAAAAGGCAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAACGTGGTTTAGTGAAACAAAAGCAATCATTCACAGATGAACTGAATTCTATTGAAACTCTCTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTGGCAGCAAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGAGAAAGATGCCTACTTGTATTATATTTTGACTCTCCATGGACAAGGTCGCACCATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGGATTGATGTTTGGACTCTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCAATGGACCGTTTTTGTGAAAATGAAAATGGTATACTTGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCATTATCAGCTTCCGCATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCCTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACATCAAAGTTTGCTTCGCTGCTCAAGTCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGGTTCTAAAACGATTGTCTCTTGCACGCCAAATAGACAAAATAACACGAAAGGATTCACAGGTGAAAGCTGAGAAAAACTGGTTCGATCGAAATGCTAACTCAGTGGAGTTAGTTACTGAAAATGATGACAGTGAGGAGGAACGAGTGAACAAACACAAGCAAATGAAAGCCAGCTCTAAACAATTGAAGACATTGCAACAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAAGACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAGCTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGGAAATTGGTTGTGATTGGTCAAGATTGTGTCGAAGCACTTCAGGCACTCCGGAACGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACGGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAGAAAGCTAAAACAGGAGAATGAATAG 2514 0.434 MEAATATTSSSQPRQRKQKRKRAAALASDPELERLNSLPWNPSFPRNNDEDDNNNGNDPFAMLATGSNELEGGFLSLEEIDEADYAFSFPEPQTNGNKNQKKKSKLDESVKEEEKKEEEDDGVGGGGGGSDEVEVKKENKKDKKKKKKKKKTKKNKKKKEEEKEEEAVTESQSVEELDTGLYTDAKDDDGVGEEDFDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKATKMEEERGEEPEKYAPTGILRALIIAPTRELAIQVTDHLKAIAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQNCVTVSSYRRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSFTDELNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEEKDAYLYYILTLHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFCENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETSKFASLLKSFSKDNFQRFPLQNSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNANSVELVTENDDSEEERVNKHKQMKASSKQLKTLQQELKMLISRPLQSKTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKRRNIENRKRKRKEEKKRLRDQRRKQKRKLKQENE 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60425g00040 837 PANTHER RNA HELICASE 144 808 - -
Stsc60425g00040 837 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 649 IPR001650 -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 689 710 - -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 85 194 - -
Stsc60425g00040 837 Coils Coil 705 725 - -
Stsc60425g00040 837 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 202 230 IPR014014 GO:0003724
Stsc60425g00040 837 SMART ultradead3 221 461 IPR014001 -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 140 156 - -
Stsc60425g00040 837 Coils Coil 804 837 - -
Stsc60425g00040 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 397 IPR027417 -
Stsc60425g00040 837 Gene3D - 486 725 IPR027417 -
Stsc60425g00040 837 Pfam DEAD/DEAH box helicase 226 434 IPR011545 GO:0003676|GO:0005524
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 98 123 - -
Stsc60425g00040 837 Coils Coil 130 170 - -
Stsc60425g00040 837 SMART helicmild6 528 609 IPR001650 -
Stsc60425g00040 837 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 451 IPR014001 -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 804 837 - -
Stsc60425g00040 837 CDD DEADc_DDX24 213 478 - -
Stsc60425g00040 837 Gene3D - 132 452 IPR027417 -
Stsc60425g00040 837 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 373 381 IPR000629 -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 807 829 - -
Stsc60425g00040 837 Coils Coil 99 119 - -
Stsc60425g00040 837 CDD SF2_C_DEAD 489 618 - -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 1 65 - -
Stsc60425g00040 837 MobiDBLite consensus disorder prediction 40 62 - -
Stsc60425g00040 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 625 IPR027417 -
Stsc60425g00040 837 Pfam Helicase conserved C-terminal domain 500 608 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60425g00040 Stsc-Chr60425 293727 300335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60425g00040 203 649 Eukaryotic Initiation Factors Gene Family AT5G11200 27.813 6.64e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60425g00040 K14805 - gmx:100806018 1137.48