Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60425g00040 | ATGGAAGCAGCTACAGCAACTACTTCTTCCTCTCAGCCTCGCCAGAGAAAGCAGAAGAGAAAGCGTGCCGCCGCGTTGGCGAGTGACCCCGAACTCGAGCGACTTAACTCGCTACCTTGGAACCCTTCGTTTCCACGAAACAACGACGAAGATGATAACAACAATGGCAACGACCCCTTTGCTATGCTCGCCACTGGCTCCAACGAGCTCGAAGGTGGTTTTCTCTCACTCGAGGAGATCGACGAGGCTGATTACGCCTTTTCCTTCCCTGAACCTCAAACCAATGGGAATAAGAACCAGAAGAAGAAGAGTAAGCTCGATGAGAGTGTGAAAGAAGAAGAGAAGAAGGAAGAGGAAGATGATGGAGTTGGCGGCGGCGGCGGCGGTAGCGATGAGGTTGAAGTGAAGAAGGAAAATAAAAAAGATAAGAAGAAGAAGAAGAAGAAAAAGAAGACAAAGAAGAATAAGAAGAAGAAGGAGGAGGAAAAGGAAGAGGAAGCGGTTACCGAAAGCCAGAGTGTTGAGGAGCTAGATACTGGTCTATATACTGATGCGAAGGATGATGATGGTGTTGGGGAAGAAGACTTTGATGAAACTGAATTTTACGCATGGAACGAGTTGAGGCTTCATCCTTTGCTAATGAAAGCAATTTACAAGCTTGGTTTCAAGGAACCGACACCAATTCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTGGCATTCGGTTTGCCCATTTTGCAGCGTATTTTGGAGGAACGAGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTGAAGAGCCAGAAAAATATGCTCCTACAGGAATTTTGAGGGCTCTCATTATTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCCATAGCCAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGAGGGATTTTAGCCGAAAAGCAGGAGAGACTTTTAAAATCAAGGCCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAGGTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCTTTCTTTGTCCTTGACGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCGATAATTGACATGCTTCCCATGTCAAATATCTCCGCTGAGGATAATTCTCAACATGCCCAAAATTGTGTTACAGTTTCAAGCTACCGAAGAAAGAAAAGGCAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAACGTGGTTTAGTGAAACAAAAGCAATCATTCACAGATGAACTGAATTCTATTGAAACTCTCTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTGGCAGCAAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGAGAAAGATGCCTACTTGTATTATATTTTGACTCTCCATGGACAAGGTCGCACCATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGGATTGATGTTTGGACTCTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCAATGGACCGTTTTTGTGAAAATGAAAATGGTATACTTGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCATTATCAGCTTCCGCATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCCTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACATCAAAGTTTGCTTCGCTGCTCAAGTCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGGTTCTAAAACGATTGTCTCTTGCACGCCAAATAGACAAAATAACACGAAAGGATTCACAGGTGAAAGCTGAGAAAAACTGGTTCGATCGAAATGCTAACTCAGTGGAGTTAGTTACTGAAAATGATGACAGTGAGGAGGAACGAGTGAACAAACACAAGCAAATGAAAGCCAGCTCTAAACAATTGAAGACATTGCAACAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAAGACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAGCTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGGAAATTGGTTGTGATTGGTCAAGATTGTGTCGAAGCACTTCAGGCACTCCGGAACGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACGGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAGAAAGCTAAAACAGGAGAATGAATAG | 2514 | 0.434 | MEAATATTSSSQPRQRKQKRKRAAALASDPELERLNSLPWNPSFPRNNDEDDNNNGNDPFAMLATGSNELEGGFLSLEEIDEADYAFSFPEPQTNGNKNQKKKSKLDESVKEEEKKEEEDDGVGGGGGGSDEVEVKKENKKDKKKKKKKKKTKKNKKKKEEEKEEEAVTESQSVEELDTGLYTDAKDDDGVGEEDFDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKATKMEEERGEEPEKYAPTGILRALIIAPTRELAIQVTDHLKAIAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQNCVTVSSYRRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSFTDELNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEEKDAYLYYILTLHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFCENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETSKFASLLKSFSKDNFQRFPLQNSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNANSVELVTENDDSEEERVNKHKQMKASSKQLKTLQQELKMLISRPLQSKTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKRRNIENRKRKRKEEKKRLRDQRRKQKRKLKQENE | 837 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60425g00040 | 837 | PANTHER | RNA HELICASE | 144 | 808 | - | - | |
Stsc60425g00040 | 837 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 488 | 649 | IPR001650 | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 689 | 710 | - | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 85 | 194 | - | - | |
Stsc60425g00040 | 837 | Coils | Coil | 705 | 725 | - | - | |
Stsc60425g00040 | 837 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 202 | 230 | IPR014014 | GO:0003724 | |
Stsc60425g00040 | 837 | SMART | ultradead3 | 221 | 461 | IPR014001 | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 140 | 156 | - | - | |
Stsc60425g00040 | 837 | Coils | Coil | 804 | 837 | - | - | |
Stsc60425g00040 | 837 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 106 | 397 | IPR027417 | - | |
Stsc60425g00040 | 837 | Gene3D | - | 486 | 725 | IPR027417 | - | |
Stsc60425g00040 | 837 | Pfam | DEAD/DEAH box helicase | 226 | 434 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 98 | 123 | - | - | |
Stsc60425g00040 | 837 | Coils | Coil | 130 | 170 | - | - | |
Stsc60425g00040 | 837 | SMART | helicmild6 | 528 | 609 | IPR001650 | - | |
Stsc60425g00040 | 837 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 234 | 451 | IPR014001 | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 804 | 837 | - | - | |
Stsc60425g00040 | 837 | CDD | DEADc_DDX24 | 213 | 478 | - | - | |
Stsc60425g00040 | 837 | Gene3D | - | 132 | 452 | IPR027417 | - | |
Stsc60425g00040 | 837 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 373 | 381 | IPR000629 | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 807 | 829 | - | - | |
Stsc60425g00040 | 837 | Coils | Coil | 99 | 119 | - | - | |
Stsc60425g00040 | 837 | CDD | SF2_C_DEAD | 489 | 618 | - | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Stsc60425g00040 | 837 | MobiDBLite | consensus disorder prediction | 40 | 62 | - | - | |
Stsc60425g00040 | 837 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 293 | 625 | IPR027417 | - | |
Stsc60425g00040 | 837 | Pfam | Helicase conserved C-terminal domain | 500 | 608 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60425g00040 | Stsc-Chr60425 | 293727 | 300335 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60425g00040 | 203 | 649 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 27.813 | 6.64e-41 | 155 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60425g00040 | K14805 | - | gmx:100806018 | 1137.48 |