Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60425g00026 ATGTCCAACTCCAACATGAAAATGATTAAGAAGGATGATGCTGATGATGATCGTATAAAGGCAATAATAGAGGAGGAGCTTGTGAGAGGGCGTGAATTTGCCAATCAGTTAAGGCAACTTATCGTCATCGATAAAACTAATAATAATAATAATGAAGGAGACTCAGCATATCATCATAATCATCTTCTCAGTAACGTCATCTCCTCCTTCGCCAACACCCTCTCTCTATTGAACAAATATCCAGTAATAGATCCCGTTCATCACCAATCTTCTTCTTCTTCTAATTCTTCTTCTTCCCCTAATAATGATCTCATGCAAATGCAACCCCCACAGCTCCACTCGAGCTTGCTTACATATGATCACCACATTTGCAATACCCCGCCGGACAGAAGAGGCTCTTACAGGAGAAAAAGAAACATGGAAACATGGACGAAGGAGTCGGAGAAGGAAAGAGAAGAAGATGGGCATCAATGGAGGAAGTACGGACAGAAAGCAATCCAGAATGAGAAATACACAAGGAACTACTTTCGCTGCACTCACAAATACGAACAGGGCTGCCAAGCAACCAAGCAGGTTCAGAAGCTTCAAGAGAACCCTCCTTTGTACAGAACCACCTACTATGGCCACCATACCTGCACTAACCCAGACATTAATAACCACATTCTCATCATGGAGGAACATGACCCTAACAATACTTCTTCTTCCTCCTCCTCCATATTCCTCAGCTTTGATAACTCCCTCCCTAATCCACCAACCAATCCCTTTTTCTCATCAACAACACCACCACCGCCACAACCACCACCTAAGATGATGAAGAAGGAGGAGGATAAGGAAGTTGTTCCGTCAAGTTCCACCCAGCAAGTTTTGGATGATTCATCAAACAATGATAATAATATTTGCTGGGATGATTTGATGATGATGATGATATGGTGA 933 0.4244 MSNSNMKMIKKDDADDDRIKAIIEEELVRGREFANQLRQLIVIDKTNNNNNEGDSAYHHNHLLSNVISSFANTLSLLNKYPVIDPVHHQSSSSSNSSSSPNNDLMQMQPPQLHSSLLTYDHHICNTPPDRRGSYRRKRNMETWTKESEKEREEDGHQWRKYGQKAIQNEKYTRNYFRCTHKYEQGCQATKQVQKLQENPPLYRTTYYGHHTCTNPDINNHILIMEEHDPNNTSSSSSSIFLSFDNSLPNPPTNPFFSSTTPPPPQPPPKMMKKEEDKEVVPSSSTQQVLDDSSNNDNNICWDDLMMMMIW 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60425g00026 310 ProSiteProfiles WRKY domain profile. 147 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60425g00026 310 SMART WRKY_cls 152 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60425g00026 310 MobiDBLite consensus disorder prediction 87 108 - -
Stsc60425g00026 310 Gene3D WRKY domain 138 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60425g00026 310 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60425g00026 310 MobiDBLite consensus disorder prediction 254 268 - -
Stsc60425g00026 310 MobiDBLite consensus disorder prediction 250 296 - -
Stsc60425g00026 310 MobiDBLite consensus disorder prediction 124 156 - -
Stsc60425g00026 310 Pfam WRKY DNA -binding domain 153 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60425g00026 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 27 234 IPR044810 GO:0003700
Stsc60425g00026 310 MobiDBLite consensus disorder prediction 121 156 - -
Stsc60425g00026 310 MobiDBLite consensus disorder prediction 281 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60425g00026 Stsc-Chr60425 209099 210580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60425g00026 20 212 WRKY Transcription Factor Family AT3G56400 34.715 9.75e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc60425g00026 WRKY 3.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60425g00026 - - adu:107473290 345.125