Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60425g00013 ATGTTGGACTACGAATGGGGGAACCCATCCATAATGCTCACCGGAAACGAAGACGGCGGACCACCACCGCCTTCCGACCAAACTCACCGCCAAATCTTCGACCACTACGCCTCTCACGCCCTCCTGCCTGACCACTTCTTGCATGGGCCCGGCACCACAACCACAGCCACAAATAACTCAAACAACAACAACACCACCACCATCGACCTCTCTCACCATCATTTCAACCCGCAACAAGCCCACCACCACGTTCCCCACAGCTTCTTCGACCTACGGGGCTACCATGGGGCCCCCGCCACCCACTACCCACCGCCACAGCCACAACCACCGCCTCCACCGCCCATGCTTTCCCTTGATCCCTTACCCCACCACACCCACTGCGGGCCTGGTGGGCATGGGCTCATGCTGGTGCCGAAATCTGAGGATGTCGGTCGGCCCATGGACTTCGTGGGCTCTCGAATTGGGCTGAACCTGGGAGGGCGCACCTACTTCTCGTCCTCGGAGGATGATTTCGTGAGCAGGCTGTACCGCAGGTCTCGGCCCACTGAACCGGGATCAACGCCGTCGTCGAACTCCCCTCGGTGCCAGGCGGAGGGGTGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTTTGCGAGTTCCACTCCAAGGCCTCCACCGTCATCGCCGCCGGGATGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTGTTCTTCTTTCAAACGCCCGAGCAGGGGCATTTCCGTCCTTTTCTACCACTTCCCGCTGGTGTGGTTGGATCCTCAGTTGGCAGGATGGTTGGGTTGTGGGTGGAGGTGCTTGGGGGGAGGTCGGGTCGGGATGGAAAAGACTTGAGTACCCTTGGGATAAGTGTTGATAATGATTGA 903 0.5936 MLDYEWGNPSIMLTGNEDGGPPPPSDQTHRQIFDHYASHALLPDHFLHGPGTTTTATNNSNNNNTTTIDLSHHHFNPQQAHHHVPHSFFDLRGYHGAPATHYPPPQPQPPPPPPMLSLDPLPHHTHCGPGGHGLMLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPTEPGSTPSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVIAAGMTQRFCQQCSRLFFFQTPEQGHFRPFLPLPAGVVGSSVGRMVGLWVEVLGGRSGRDGKDLSTLGISVDND 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60425g00013 300 Gene3D - 185 257 IPR036893 GO:0003677|GO:0005634
Stsc60425g00013 300 SUPERFAMILY SBT domain 193 249 IPR036893 GO:0003677|GO:0005634
Stsc60425g00013 300 MobiDBLite consensus disorder prediction 1 27 - -
Stsc60425g00013 300 ProSiteProfiles Zinc finger SBP-type profile. 192 269 IPR004333 GO:0003677
Stsc60425g00013 300 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 241 IPR044817 GO:0003677
Stsc60425g00013 300 Pfam SBP domain 195 242 IPR004333 GO:0003677
Stsc60425g00013 300 MobiDBLite consensus disorder prediction 93 132 - -
Stsc60425g00013 300 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60425g00013 Stsc-Chr60425 97037 98293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60425g00013 1 242 SBP-box Gene Family AT1G02065 44.841 7.50e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60425g00013 SBP 5.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60425g00013 - - gmx:100778566 329.717