Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60425g00003 ATGGAAAGCAGTGGTGGTGATGAAGCTGCACATCAAGAAAACAATAACAATAACAACAACACAAGCACGAGTTCATCATGTTCATCAGAAGAGTTAGAATTAGAAAGAGGAAAGAAGAAGAAGAGGGAGAGGGAGAGTGAGAAGCACGCGACATACAGGGGCGTGAGGATGAGGAATTGGGGGAAGTGGGTGTCAGAGATAAGGCAACCAAGAAAGAAAAACAGAATATGGCTGGGCACGTACCCAACTGCCGAAATGGCCGCAAGAGCGCATGACGTGGCAGCCATCGCCATCAAAGGAGATTCCGCCTTCCTCAACTTCCCTCAACTCGCCGGACTCCTTCCCAGGCCTGCTACTACTTCTCCCAAAGATATCCAGCTTGCTGCCGCCATCGCCGCCAACGACACCGCCTTTCAATTTCATCATAACTCCCGCGATGACGCTGATAAACCTAATCAGCAACCACCACCTTCTTCTTCGTCTTCTTCTTCCTCTTCTTCTTCATCGTCACAAGAACATGATGACACGTTGTTTGATTTGCCAGATCTTTTCCCCGCTGATGATGGACTTTGCTCTTATCCTTCATCTTCTTCATGGCATTTTCGCATTGAGGATCCCTTGTTATTTTTCTCTTTGGATAACTACTAG 648 0.4738 MESSGGDEAAHQENNNNNNNTSTSSSCSSEELELERGKKKKRERESEKHATYRGVRMRNWGKWVSEIRQPRKKNRIWLGTYPTAEMAARAHDVAAIAIKGDSAFLNFPQLAGLLPRPATTSPKDIQLAAAIAANDTAFQFHHNSRDDADKPNQQPPPSSSSSSSSSSSSSQEHDDTLFDLPDLFPADDGLCSYPSSSSWHFRIEDPLLFFSLDNY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60425g00003 215 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Stsc60425g00003 215 MobiDBLite consensus disorder prediction 142 178 - -
Stsc60425g00003 215 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Stsc60425g00003 215 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Stsc60425g00003 215 MobiDBLite consensus disorder prediction 31 51 - -
Stsc60425g00003 215 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Stsc60425g00003 215 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Stsc60425g00003 215 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Stsc60425g00003 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 185 - -
Stsc60425g00003 215 MobiDBLite consensus disorder prediction 150 174 - -
Stsc60425g00003 215 MobiDBLite consensus disorder prediction 1 51 - -
Stsc60425g00003 215 MobiDBLite consensus disorder prediction 8 30 - -
Stsc60425g00003 215 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Stsc60425g00003 215 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
Stsc60425g00003 215 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60425g00003 Stsc-Chr60425 19160 19882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60425g00003 39 209 AP2-EREBP Transcription Factor Family AT2G44940 45.455 2.83e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60425g00003 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60425g00003 - - ahf:112726739 244.202