Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60425g00002 ATGTTTGGGCGTGGAGCAAGAAGGAGCAGCGATAACACCAAATATTATGATGTTCTTGGTGTTTCAAAAAGTGCAAGTGAAGATGAAATCAAGAAGGCCTATAGAAAGGCTGCAATGAAGAATCATCCAGATAAAGGTGGAGATCCTGAGAAGTTCAAGGAGCTAGGTCAAGCTTATGAAGTTTTAAGTGATCCGGAAAAGAGAGAACTGTATGATCAATATGGTGAAGATGCCCTTAAGGAAGGNNNNNNNNNNAGCTCATTTCATAACCCATTTGATATTTTTGAATCATTTTTTGGTGGAGCTGGATTTGGTGGTGGTAGCTCACGAGGTAGAAGACAAAAGCATGGTGAAGATGTCGTGCATTCTCTAAAGGTTTCCTTGGAGGATGTTTATAATGGCACGACAAAGAAACTATCTCTTTCTAGAAATATATTGTGCCCGAAATGTAAAGGGAAGGGTTCCAAAAGTGGAAATGCTGGTAGGTGTTTTGGATGCCAAGGCACGGGTATGAAGATTACAACAAGGCAGATTGGACTGGGCATGATTCAACAAATGCAACACATCTGTCCGGAATGCAGAGGAAGTGGTGAGGTCATTAGCGAGAGAGATAGATGCACGCAGTGCAAGGGTAACAAGGTCTCCCAAGAAAAGAAGGTGCTCGAGGTGCATGTTGATAAGGGGATGCAACAGGGCCAGAAGATTGTGTTTGAAGGTCAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATTGTTTTTGTCCTACAAGTAAAGGAGCACCCGCGATTCAAAAGGGAGCATGATGACCTTTATATCGAGCACAATCTCAACTTGACCGAGGCTCTTTGTGGCTTCCAGTTTGCTGTCACCCATCTTGATGGGAGACAACTATTGATCAAATCAAACCCTGGGGAAGTCATCAAACCAGGACAAACAAAAGCCATAAATGATGAGGGAATGCCGCAACACAATAGGCCCTTCATGAAGGGTCGTCTTTACATCAAGTTCAACGTGGATTTCCCAGACTCAGGGTTCCTTTCTCCTGACCAATGCCGATTATTAGAGACAATATTACCTCAGAAGTCCAGCAAGCAGTTGACAGATATGGAGCTGGATGAGTGTGAGGAGACCACATTGCATGATGTCAACATGAAGGATGAGATGAGAAGAAAGCAGCAACAGCACTACCAGGAGGCATATGATGATGATGACGATGACCAATCCATGCCCCGAGTGCAATGTGCTCAACAGTAG 1257 0.4383 MFGRGARRSSDNTKYYDVLGVSKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRELYDQYGEDALKEGXXXSSFHNPFDIFESFFGGAGFGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNILCPKCKGKGSKSGNAGRCFGCQGTGMKITTRQIGLGMIQQMQHICPECRGSGEVISERDRCTQCKGNKVSQEKKVLEVHVDKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKEHPRFKREHDDLYIEHNLNLTEALCGFQFAVTHLDGRQLLIKSNPGEVIKPGQTKAINDEGMPQHNRPFMKGRLYIKFNVDFPDSGFLSPDQCRLLETILPQKSSKQLTDMELDECEETTLHDVNMKDEMRRKQQQHYQEAYDDDDDDQSMPRVQCAQQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60425g00002 418 FunFam Chaperone protein DNAj, putative 11 111 - -
Stsc60425g00002 418 Gene3D - 147 213 - -
Stsc60425g00002 418 Pfam DnaJ C terminal domain 121 342 IPR002939 -
Stsc60425g00002 418 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Stsc60425g00002 418 Gene3D DnaJ domain 11 109 IPR036869 -
Stsc60425g00002 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 399 IPR044713 GO:0006457|GO:0030544
Stsc60425g00002 418 MobiDBLite consensus disorder prediction 380 418 - -
Stsc60425g00002 418 CDD DnaJ_C 118 344 - -
Stsc60425g00002 418 FunFam DnaJ subfamily A member 2 147 213 - -
Stsc60425g00002 418 Pfam DnaJ domain 14 72 IPR001623 -
Stsc60425g00002 418 Hamap Chaperone protein DnaJ [dnaJ]. 11 388 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc60425g00002 418 Gene3D - 262 343 - -
Stsc60425g00002 418 FunFam DnaJ subfamily A member 2 261 343 - -
Stsc60425g00002 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 263 344 IPR008971 GO:0006457|GO:0051082
Stsc60425g00002 418 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Stsc60425g00002 418 MobiDBLite consensus disorder prediction 380 399 - -
Stsc60425g00002 418 SUPERFAMILY Chaperone J-domain 10 108 IPR036869 -
Stsc60425g00002 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 262 IPR008971 GO:0006457|GO:0051082
Stsc60425g00002 418 SMART dnaj_3 13 67 IPR001623 -
Stsc60425g00002 418 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Stsc60425g00002 418 Gene3D - 110 261 - -
Stsc60425g00002 418 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Stsc60425g00002 418 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Stsc60425g00002 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 215 IPR036410 -
Stsc60425g00002 418 CDD DnaJ 15 64 IPR001623 -
Stsc60425g00002 418 PRINTS DnaJ domain signature 47 67 IPR001623 -
Stsc60425g00002 418 PRINTS DnaJ domain signature 67 86 IPR001623 -
Stsc60425g00002 418 PRINTS DnaJ domain signature 16 34 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60425g00002 Stsc-Chr60425 7763 11304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60425g00002 15 74 C2H2 Transcription Factor Family AT1G74250 47.826 2.39e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60425g00002 K09503 - gmx:100800590 721.465