Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00041 ATGTACCACCCTTCCTCTTCCTCCTCCTCTTCTTCTCAGGCCCACAACTCAACCCTTTCCGAACCCGGTTTGACCCGCTACGGCTCCGCTCCTGGCTCTCTCCTCCGCACTGCCGTCGATGCCGTCATAGGCGGCGGGGTAGGGGCTGGAGGCCCCCGCCATACTCATCCCCTCATGCCTCCCGGATCTCACTACTTCTCCGGGGAGTCTTCCGAGTCCACATCCAAAGTCAACGACAACTCCAGATCGTACGGACTTCAGCAGGACGCCTTCGCCGGATCCTCTTCTTCCGCCTTGCTCCGCCAGAGGAGCTCCCCCGCCGGCTTCCTCTCCCACCTTGCTGACAATGCTGGGGGAGGTGGAAATGGTGGTGGAGGGGGGTTCACGATCACGAGGGGGGGCGGCGGCGGCGGAGGAGGAAGCTACGGCTCTAACAGTGGGAGGTTGAAGTCTCAGATGAGCTTCACCGGCCAAGACTCTCTTTCTCAGATATCAGAGGTGAGTGAGAGTGTTGTGGTGGATGCATCCACTTCTGAGCGTGCTTATGCAATGGACCACTGCTGGGACAACTCTAACTCCAACTCCGGCTCCATCGTCTTCTCCGCCGCGCCCTCCAAACGCTCCAAAAACATCGATGGTGACATCCTCAATTGTCTCACTGCCTTGGATTCTCAGTATAGTCTGCCACAAACTGCTCTTGAAATGGCAACAATGGAGAAGCTAATGCACATTCCTGAAGACTCTGTCCCTTGTAAAATCCGCGCTAAGCGAGGCTGCGCCACTCACCCCCGCAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAACTGCAGGAACTTGTACCGAATATGGATAAGGTGGCTTAA 882 0.5658 MYHPSSSSSSSSQAHNSTLSEPGLTRYGSAPGSLLRTAVDAVIGGGVGAGGPRHTHPLMPPGSHYFSGESSESTSKVNDNSRSYGLQQDAFAGSSSSALLRQRSSPAGFLSHLADNAGGGGNGGGGGFTITRGGGGGGGGSYGSNSGRLKSQMSFTGQDSLSQISEVSESVVVDASTSERAYAMDHCWDNSNSNSGSIVFSAAPSKRSKNIDGDILNCLTALDSQYSLPQTALEMATMEKLMHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKVA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00041 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 293 IPR011598 GO:0046983
Stsc60424g00041 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 292 - -
Stsc60424g00041 293 MobiDBLite consensus disorder prediction 66 81 - -
Stsc60424g00041 293 MobiDBLite consensus disorder prediction 1 28 - -
Stsc60424g00041 293 MobiDBLite consensus disorder prediction 46 81 - -
Stsc60424g00041 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 290 IPR036638 GO:0046983
Stsc60424g00041 293 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00041 Stsc-Chr60424 278074 281713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60424g00041 23 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 44.514 1.69e-58 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00041 - - ahf:112776078 441.81