Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00040 ATGTACCACCCTTCCTCTTCCTCCTCCTCTTCTTCTCAGGCCCACAACTCAACCCTTTCCGAACCCGGTTTGACCCGCTACGGCTCCGCTCCTGGCTCTCTCCTCCGCACTGCCGTCGATGCCGTCATAGGCGGCGGGGTAGGGGCTGGAGGCCCCCGCCATACTCATCCCCTCATGCCTCCCGGATCTCACTACTTCTCCGGGGAGTCTTCCGAGTCCACATCCAAAGTCAACGACAACTCCAGATCGTACGGACTTCAGCAGGACGCCTTCGCCGGATCCTCTTCTTCCGCCTTGCTCCGCCAGAGGAGCTCCCCCGCCGGCTTCCTCTCCCACCTTGCTGACAATGCTGGGGGAGGTGGAAATGGTGGTGGAGGGGGGTTCACGATCACGAGGGGGGGCGGCGGCGGCGGAGGAGGAAGCTACGGCTCTAACAGTGGGAGGTTGAAGTCTCAGATGAGCTTCACCGGCCAAGACTCTCTTTCTCAGATATCAGAGGTGAGTGAGAGTGTTGTGGTGGATGCATCCACTTCTGAGCGTGCTTATGCAATGGACCACTGCTGGGACAACTCTAACTCCAACTCCGGCTCCATCGTCTTCTCCGCCGCGCCCTCCAAACGCTCCAAAAACATCGATGGTGACATCCTCAATTGTCTCACTGCCTTGGATTCTCAGTATAGTCTGCCACAAACTGCTCTTGAAATGGCAACAATGGAGAAGCTAATGCACATTCCTGAAGACTCTGTCCCTTGTAAAATCCGCGCTAAGCGAGGCTGCGCCACTCACCCCCGCAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGGAAGCTGAAGAAACTGCAGGAACTTGTACCGAATATGGATAAGCAAACAAGCTATGCAGACATGCTAGATTTGGCGGTTCAACATATTAAAGGCCTTCAAACTCAAGTCCAGAAGCTTCACACTGAACTTGAGAATTGCACTTGTGGATGCAAACCAAGCAAATAA 996 0.5472 MYHPSSSSSSSSQAHNSTLSEPGLTRYGSAPGSLLRTAVDAVIGGGVGAGGPRHTHPLMPPGSHYFSGESSESTSKVNDNSRSYGLQQDAFAGSSSSALLRQRSSPAGFLSHLADNAGGGGNGGGGGFTITRGGGGGGGGSYGSNSGRLKSQMSFTGQDSLSQISEVSESVVVDASTSERAYAMDHCWDNSNSNSGSIVFSAAPSKRSKNIDGDILNCLTALDSQYSLPQTALEMATMEKLMHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHTELENCTCGCKPSK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00040 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Stsc60424g00040 331 FunFam Transcription factor bHLH130 family 260 328 - -
Stsc60424g00040 331 CDD bHLH_AtbHLH_like 264 316 IPR045239 -
Stsc60424g00040 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 324 IPR036638 GO:0046983
Stsc60424g00040 331 SMART finulus 265 315 IPR011598 GO:0046983
Stsc60424g00040 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 321 - -
Stsc60424g00040 331 Gene3D - 260 326 IPR036638 GO:0046983
Stsc60424g00040 331 MobiDBLite consensus disorder prediction 66 81 - -
Stsc60424g00040 331 MobiDBLite consensus disorder prediction 1 28 - -
Stsc60424g00040 331 MobiDBLite consensus disorder prediction 46 81 - -
Stsc60424g00040 331 MobiDBLite consensus disorder prediction 1 24 - -
Stsc60424g00040 331 Pfam Helix-loop-helix DNA-binding domain 264 310 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00040 Stsc-Chr60424 278074 281713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60424g00040 23 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 48.056 6.68e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60424g00040 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00040 - - ahf:112776078 441.81