Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00037 ATGGATCGGAAAAGAGGAAGGCAGGACCACCCTTTCAACGGCACCGGCAATGGCGGCTCCAAGAAATTCAGGCCCTCCTCAGCTTCAGAAATGGAGACTGGTTTAGGAAGCAAATTGAAGCCTTGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGCCATTTCTTGCATTATGTTCCTGGTGGCATGAAAGCCGTTCAAATGATGAATGCTGGTAGCAATCCTGCTCTTCCACAAGTTGGTAGAACACCGCCTGTTCCGCCATCTTTCCCAGATGGGTCTTCTCCTCCAATGGTTAAAACCAGATTGTGCAACAAGTTTAATTCAAGCGAAGGTTGCAAATTTGGTGACAAATGTCACTTCGCCCATGGTGAGTGGGAGATTGGCAAGCCTACAATGCCTTCGTATGAAGATAGACCAAGGATGGGTGGGCGAGTTGAGCCCCCAGCTCATGGAGCTGCTGCCGGCTTTGGAGCCTCAGCTACTGCAAAGATTAGTATCAATGCTGCCCTAGCTGGAGCTGTTATTGGTAAAAATGGTATCAACTCTAAGCAAATCTGTCGTGTAACAGGAGCAAAACTTTCTATCAGGGAACATGATTCTGATTCTAACCTTAAAAATATTGAGCTTGAAGGAAGTTTTGATCAGATCAAACAAGCAAGTTCCATGGTCCATGAACTTATTCTGAATGTTAGTGCGGCCGCTGGACCTGCAAAGAAGAATGTCAGTTCATATGGTCCCGGTTCAAACAACTTCAAAACCAAANNNNNNNNNNTGTGA 792 0.4558 MDRKRGRQDHPFNGTGNGGSKKFRPSSASEMETGLGSKLKPCTKFFSTSGCPFGEGCHFLHYVPGGMKAVQMMNAGSNPALPQVGRTPPVPPSFPDGSSPPMVKTRLCNKFNSSEGCKFGDKCHFAHGEWEIGKPTMPSYEDRPRMGGRVEPPAHGAAAGFGASATAKISINAALAGAVIGKNGINSKQICRVTGAKLSIREHDSDSNLKNIELEGSFDQIKQASSMVHELILNVSAAAGPAKKNVSSYGPGSNNFKTKXXXX 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00037 263 Gene3D K Homology domain, type 1 158 258 IPR036612 GO:0003723
Stsc60424g00037 263 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 129 IPR000571 GO:0046872
Stsc60424g00037 263 Pfam KH domain 167 229 IPR004088 GO:0003723
Stsc60424g00037 263 ProSiteProfiles Type-1 KH domain profile. 164 228 - -
Stsc60424g00037 263 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 234 IPR036612 GO:0003723
Stsc60424g00037 263 SUPERFAMILY CCCH zinc finger 37 63 IPR036855 GO:0046872
Stsc60424g00037 263 ProSiteProfiles Zinc finger C3H1-type profile. 102 130 IPR000571 GO:0046872
Stsc60424g00037 263 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Stsc60424g00037 263 SMART c3hfinal6 102 129 IPR000571 GO:0046872
Stsc60424g00037 263 CDD KH-I_AtC3H36_like 168 232 - -
Stsc60424g00037 263 PANTHER CCCH ZINC FINGER/TIS11-RELATED 19 182 IPR045877 GO:0003729
Stsc60424g00037 263 MobiDBLite consensus disorder prediction 13 33 - -
Stsc60424g00037 263 SMART kh_6 163 233 IPR004087 GO:0003676
Stsc60424g00037 263 MobiDBLite consensus disorder prediction 244 263 - -
Stsc60424g00037 263 MobiDBLite consensus disorder prediction 79 98 - -
Stsc60424g00037 263 FunFam Zinc finger CCCH domain-containing protein 97 134 - -
Stsc60424g00037 263 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
Stsc60424g00037 263 Gene3D - 97 134 - -
Stsc60424g00037 263 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Stsc60424g00037 263 MobiDBLite consensus disorder prediction 1 35 - -
Stsc60424g00037 263 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00037 Stsc-Chr60424 227975 231549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60424g00037 KH_1 2.2e-09 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00037 - - gmx:100792652 384.415