Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00034 ATGGCGATGAATTACTTCAACAATGCGTCTGATTCCGCGGCGAAACGATTGAGGTACGAAGAGAGTGCAGGGCTTCAGAAATTCAAAGGCGTTGTGCCTCAGCAAAACGGCCATTGGGGCGCACAAATCTATGCAAACCACCAGAGGATATGGCTGGGGACATTCAAGACGGAGAGAGAAGCCGCCATGGCTTACGACAGTGCAACCATCAAACTAAGAAGCGGCGAAAGCCATAGAAACTTCCCTTGGAACGATCAAACCGTCCAGGAGCCTTATTTCCAGAGCCATTACAGCACGGAAACTGTCCTCGCCATGATCAGAGACGGCACCTATCCTTCGAAATTCACATCTTTTCTTAGAAATCAAAACCATAAAGAAGAAGCTTCTGGACAAAGCTGTTCGAATGTCAACAAATGCATAAGAGTTCGAGGAGGCGAAAGCTTTTCTTGCACGCAACTGTTTCAGAAGGAGTTAACTCCGAGCGACGTTGGGAAACTGAACAGACTGGTGATTCCGAAGAAGCATGCGGTCACTTATTTGCCTTATGTTGATGGGAATAATAATAATAATAATGCGGCGGCGGAAACAGCCGAATGCGGCGGCGTTGACGTGGAGGTTGTGTTTTATGATAAGTTGATGAGGTCGTGGAAATTTAGGTACTGTTATTGGAAGAGTAGCCAGAGTTATGTGTTCACGAGAGGGTGGAATCGTTTCGTGAAGGACAAGAAACTGAAGGCTAAGGATATTATTGCGTTTTACATGTGTGAGCCTGTGAATAATTCGAACGACGTTCATCGTCAGCAGAGTATGTTTGGGTTGATCGATGTGATTTATAATACAGAACATGATAATAATAATAATGTGGAGGTTGAAACGATGAGAAAACAGGTAATGGGGAAGAGTACTACTGGTAATAGGTTAGGGTGCAGTGAAGTAGTTATAGAAGATAGGGGAGATTATATGGAAGAAGATGAAGATGAAGAAGAACAAGAAGAAGAAGATAATAAAGTAGATGGAAATTCATCAACGCATAAAAGTGTGAGGCTCTTTGGAGTATGTATCAGCTGA 1068 0.4354 MAMNYFNNASDSAAKRLRYEESAGLQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPYFQSHYSTETVLAMIRDGTYPSKFTSFLRNQNHKEEASGQSCSNVNKCIRVRGGESFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYLPYVDGNNNNNNAAAETAECGGVDVEVVFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYMCEPVNNSNDVHRQQSMFGLIDVIYNTEHDNNNNVEVETMRKQVMGKSTTGNRLGCSEVVIEDRGDYMEEDEDEEEQEEEDNKVDGNSSTHKSVRLFGVCIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00034 355 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Stsc60424g00034 355 ProSiteProfiles AP2/ERF domain profile. 27 82 IPR001471 GO:0003700|GO:0006355
Stsc60424g00034 355 SMART B3_2 154 263 IPR003340 GO:0003677
Stsc60424g00034 355 CDD B3_DNA 153 254 IPR003340 GO:0003677
Stsc60424g00034 355 MobiDBLite consensus disorder prediction 318 343 - -
Stsc60424g00034 355 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
Stsc60424g00034 355 Gene3D - 149 271 IPR015300 -
Stsc60424g00034 355 MobiDBLite consensus disorder prediction 318 335 - -
Stsc60424g00034 355 SMART rav1_2 27 88 IPR001471 GO:0003700|GO:0006355
Stsc60424g00034 355 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Stsc60424g00034 355 ProSiteProfiles B3 DNA-binding domain profile. 154 268 IPR003340 GO:0003677
Stsc60424g00034 355 Gene3D AP2/ERF domain 26 83 IPR036955 GO:0003700|GO:0006355
Stsc60424g00034 355 FunFam AP2 domain-containing protein RAP2.8 26 83 - -
Stsc60424g00034 355 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 352 IPR044800 GO:0003700
Stsc60424g00034 355 Pfam AP2 domain 27 73 IPR001471 GO:0003700|GO:0006355
Stsc60424g00034 355 SUPERFAMILY DNA-binding pseudobarrel domain 152 258 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00034 Stsc-Chr60424 221959 223026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60424g00034 27 276 RAV Transcription Factor Family AT1G51120 60.687 6.62e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Stsc60424g00034 B3 3e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00034 K09287 - gmx:102660503 364.385