Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00015 ATGCGTCGGTGGCTGTGTTGCACGTGTCAGGTAGAAGAGTCTTACCCATCGCATGAAAGTGAGCACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACCAGAAAGGTTCGAAGGTGTCAGCACCCGTCAAACCAGAATCACAAAAGGCACCACCGCCTATTGAAGTTCCGGCATTATCTTTAGAGGAGCTGAAGGAGAAGACTGAGAACTTTGGATCAAAGGCATTGATTGGTGAAGGATCATATGGAAGAGTATATTTTGCAACCTTAAATGATGGGAAATCAGTGGCCGTGAAAAAGCTTGATGTTTCATCTGAACCTGAAACAAACAATGAGTTTTTGACCCAGGTTTCCATGGTTTCAAGGCTGAAGAATGATAATTTTGTTGAGCTGCATGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGGCCAACTCTTGATTGGATACAGAGAGTTAGGATTGCAGTCGATGCGGCAAGGGGATTAGAATATTTGCATGAGAAAGTTCAACCACCTATTATACACAGAGATATCAGATCAAGCAATGTGCTCATATTTGAAGATTTTAAGGCTAAGATAGCTGATTTTAACCTTTCAAATCAAGCCCCTGACATGGCTGCACGCCTTCATTCTACAAGAGTGTTGGGAACTTTTGGTTATCATGCTCCAGAGTATGCAATGACTGGCCAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTAGAACTTCTTACCGGAAGAAAACCTGTTGATCATACCATGCCCCGTGGACAGCAAAGTCTTGTTACATGGGCTACCCCAAGATTGAGTGAAGATAAAGTTAAACAATGTGTTGATCCAAAGCTGAGAAATGACTATCCCCCTAAAGGAGTTGCCAAGCTTGCAGCGGTCGCGGCTCTTTGCGTGCAATATGAAGCCGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCTCTCCAACCACTTCTCAAGACTCCAGCTCCTGCTGCACCCGAAAGTTGA 1014 0.4398 MRRWLCCTCQVEESYPSHESEHLKSPRNYGDGNQKGSKVSAPVKPESQKAPPPIEVPALSLEELKEKTENFGSKALIGEGSYGRVYFATLNDGKSVAVKKLDVSSEPETNNEFLTQVSMVSRLKNDNFVELHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLRNDYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKTPAPAAPES 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00015 337 Gene3D Phosphorylase Kinase; domain 1 43 135 - -
Stsc60424g00015 337 MobiDBLite consensus disorder prediction 13 53 - -
Stsc60424g00015 337 ProSiteProfiles Protein kinase domain profile. 71 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60424g00015 337 ProSitePatterns Tyrosine protein kinases specific active-site signature. 173 185 IPR008266 GO:0004672|GO:0006468
Stsc60424g00015 337 Gene3D Transferase(Phosphotransferase) domain 1 136 332 - -
Stsc60424g00015 337 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 131 331 - -
Stsc60424g00015 337 PIRSF ILK 139 331 - -
Stsc60424g00015 337 PIRSF ILK 12 142 - -
Stsc60424g00015 337 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Stsc60424g00015 337 SMART tyrkin_6 71 323 IPR020635 GO:0004713|GO:0006468
Stsc60424g00015 337 FunFam PTI1-like tyrosine-protein kinase 3 125 333 - -
Stsc60424g00015 337 SUPERFAMILY Protein kinase-like (PK-like) 54 326 IPR011009 -
Stsc60424g00015 337 Pfam Protein tyrosine and serine/threonine kinase 145 323 IPR001245 GO:0004672|GO:0006468
Stsc60424g00015 337 Pfam Protein tyrosine and serine/threonine kinase 76 133 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00015 Stsc-Chr60424 140276 143401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60424g00015 5 324 Receptor kinase-like Gene Family AT4G02010 44.767 2.91e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Stsc60424g00015 PK_Tyr_Ser-Thr 6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00015 K13436 - gmx:100790016 625.55