Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00005 ATGTCATCCACCAATTATTGTTTTGAAACAACAGCTAATGATGCCTACAATTTTCTGCACAATTGGTTCCTCAAATTCCCATCATATAGAACAAGGACATTTTACATGGCAGGGGAGAGCTATGCAGGGAAGTATGTACCTGAGCTAGCAGAACTGATATATGATAGGAACAATGACCCTTCCCTTCATATTAATCTCAAGGGTATTTTGTTGGGGAATCCAGAAACATCTGATCCTGAAGACAGGTTAGGGAGAGTTGATTACGCTTGGAGCCATGCAGTGATATCTGATGAAACCTACAAAAAATTAAGAACAAGTTGTGACTTTAATAGCAGAAGTGAGGGAAACAAAGATTGCTATGATGGATATGATGAAATGTATAAGCAGTACGATGAAATTGACATTTATAGTCTCTACACCTCTGTTTGTTTTGCCAGTTCAAATGATCAAACTTCACAAACAGAAATGAGTCGTTCATTTGGGAAGATGCGTAGAATGATGGGAGGTTATGACCCATGCTTGGATCATTATGCAAGAGCCTTTTATAACAGAGGAGATGTTCAGAAAGCCCTCCATGCAAGTGATGGTCACAATCTCAAGAATTGGAGTATTTGCAACTTCCATATATACGATAGTTGGAATTGGAACAAATCAAAGGCCTCTGTTATCCCAATATACAGGAAGCTTATTTCAGGAGGACTTAGGATTTGGGTTTATAGTGGAGACACAGATGGAAGAGTGCCAGTGCTTTCGACAAGATACAGTTTGAGGATTCTAGGTTTGAGTATCACTAAGACATGGAGGCCATGGTACCATGAGAAAGAGGTTAGTGGGTGGTACGAAGAATATGAAGGTCTCACTTTTGCAACATTTAGAGGAGCTGGCCATTCTGTTCCTTGCTTTAAACCAAGCAATTCACTTGCATTCTTCTCTTCCTTCCTTCTTGGAGAATCTCCGTCGTCTACTGGATCTACATGA 978 0.3998 MSSTNYCFETTANDAYNFLHNWFLKFPSYRTRTFYMAGESYAGKYVPELAELIYDRNNDPSLHINLKGILLGNPETSDPEDRLGRVDYAWSHAVISDETYKKLRTSCDFNSRSEGNKDCYDGYDEMYKQYDEIDIYSLYTSVCFASSNDQTSQTEMSRSFGKMRRMMGGYDPCLDHYARAFYNRGDVQKALHASDGHNLKNWSICNFHIYDSWNWNKSKASVIPIYRKLISGGLRIWVYSGDTDGRVPVLSTRYSLRILGLSITKTWRPWYHEKEVSGWYEEYEGLTFATFRGAGHSVPCFKPSNSLAFFSSFLLGESPSSTGST 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00005 325 PRINTS Carboxypeptidase C serine protease (S10) family signature 22 47 IPR001563 GO:0004185|GO:0006508
Stsc60424g00005 325 PRINTS Carboxypeptidase C serine protease (S10) family signature 286 299 IPR001563 GO:0004185|GO:0006508
Stsc60424g00005 325 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 303 IPR001563 GO:0004185|GO:0006508
Stsc60424g00005 325 ProSitePatterns Serine carboxypeptidases, serine active site. 36 43 IPR018202 GO:0004185
Stsc60424g00005 325 Gene3D alpha/beta hydrolase 2 322 IPR029058 -
Stsc60424g00005 325 FunFam Carboxypeptidase 171 318 - -
Stsc60424g00005 325 Pfam Serine carboxypeptidase 9 315 IPR001563 GO:0004185|GO:0006508
Stsc60424g00005 325 SUPERFAMILY alpha/beta-Hydrolases 9 317 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00005 Stsc-Chr60424 11376 13129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60424g00005 178 317 Calmodulin-binding Proteins AT2G22960 31.206 3.69e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00005 K16297 - gmx:100805845 513.072