Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60424g00004 ATGCTTTTCTTGTTATTATTGAAACCTGCTATGATCTGTTATGGAGATAGTAGTAGTAACAGGAAACTGAGTCCTGAAATAGTAGCAGTAGGAGATAACAACAGTGGTGTCGCCATTGGTGACCTTGTGACTAACTTGCCTGGCCAGCCACCTGTAGATTTCAAGCACTATGCTGGCTATGTCACTGTTCATAATGGAAGAAGAGCACTCTTCTATTGGTTTTTTGAAGCCATCACCAACCCTCAAGATAAACCTCTGGTGCTGTGGCTCAATGGAGGTCCTGGATGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCGTTTTTAGTGGACACAGATGGCAAGGGCCTTAAATTGAATAAATACTCTTGGAACAAAGAAGCCAACATGTTGTTCTTGGAATCTCCTGTTGGAGTAGGCTTTTCCTACTCAAATTCAACTAAGGACTATGAAAATCTAGAAGATGATATCACAGCTAATGATGCCTACAATTTTCTGCACAATTGGTTCCTCAAATTCCCATCATATAGAACAAGGACATTTTACATGGCAGGGGAGAGCTATGCAGGGAAGTATGTACCTGAGCTAGCAGAACTGATATATGATAGGAACAATGACCCTTCCCTTCATATTAATCTCAAGGGTATTTTGTTGGGGAATCCAGAAACATCTGATCCTGAAGACAGGTTAGGGAGAGTTGATTACGCTTGGAGCCATGCAGTGATATCTGATGAAACCTACAAAAAATTAAGAACAAGTTGTGACTTTAATAGCAGAAGTGAGGGAAACAAAGATTGCTATGATGGATATGATGAAATGTATAAGCAGTACGATGAAATTGACATTTATAGTCTCTACACCTCTGTTTGTTTTGCCAGTTCAAATGATCAAACTTCACAAACAGAAATGAGTCGTTCATTTGGGAAGATGCGTAGAATGATGGGAGGTTATGACCCATGCTTGGATCATTATGCAAGAGCCTTTTATAACAGAGGAGATGTTCAGAAAGCCCTCCATGCAAGTGATGGTCACAATCTCAAGAATTGGAGTATTTGCAACTTCCATATATACGATAGTTGGAATTGGAACAAATCAAAGGCCTCTGTTATCCCAATATACAGGAAGCTTATTTCAGGAGGACTTAGGATTTGGGTTTATAGTGGAGACACAGATGGAAGAGTGCCAGTGCTTTCGACAAGATACAGTTTGAGGATTCTAGGTTTGAGTATCACTAAGACATGGAGGCCATGGTACCATGAGAAAGAGGTTAGTGGGTGGTACGAAGAATATGAAGGTCTCACTTTTGCAACATTTAGAGGAGCTGGCCATTCTGTTCCTTGCTTTAAACCAAGCAATTCACTTGCATTCTTCTCTTCCTTCCTTCTTGGAGAATCTCCGTCGTCTACTGGATCTACATGA 1425 0.4084 MLFLLLLKPAMICYGDSSSNRKLSPEIVAVGDNNSGVAIGDLVTNLPGQPPVDFKHYAGYVTVHNGRRALFYWFFEAITNPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKLNKYSWNKEANMLFLESPVGVGFSYSNSTKDYENLEDDITANDAYNFLHNWFLKFPSYRTRTFYMAGESYAGKYVPELAELIYDRNNDPSLHINLKGILLGNPETSDPEDRLGRVDYAWSHAVISDETYKKLRTSCDFNSRSEGNKDCYDGYDEMYKQYDEIDIYSLYTSVCFASSNDQTSQTEMSRSFGKMRRMMGGYDPCLDHYARAFYNRGDVQKALHASDGHNLKNWSICNFHIYDSWNWNKSKASVIPIYRKLISGGLRIWVYSGDTDGRVPVLSTRYSLRILGLSITKTWRPWYHEKEVSGWYEEYEGLTFATFRGAGHSVPCFKPSNSLAFFSSFLLGESPSSTGST 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60424g00004 474 Gene3D - 371 465 - -
Stsc60424g00004 474 SUPERFAMILY alpha/beta-Hydrolases 41 466 IPR029058 -
Stsc60424g00004 474 Gene3D - 322 360 - -
Stsc60424g00004 474 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
Stsc60424g00004 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 452 IPR001563 GO:0004185|GO:0006508
Stsc60424g00004 474 FunFam Carboxypeptidase 38 294 - -
Stsc60424g00004 474 FunFam Carboxypeptidase 371 465 - -
Stsc60424g00004 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
Stsc60424g00004 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Stsc60424g00004 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Stsc60424g00004 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Stsc60424g00004 474 Pfam Serine carboxypeptidase 47 463 IPR001563 GO:0004185|GO:0006508
Stsc60424g00004 474 Gene3D alpha/beta hydrolase 39 294 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60424g00004 Stsc-Chr60424 11376 14220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60424g00004 327 466 Calmodulin-binding Proteins AT2G22960 31.206 4.21e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60424g00004 K16297 - gmx:100819700 726.857