Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00044 ATGGATCGTCCATTCATTCTCTTTATGATTGGAGTCATCTTTGTGTTCTCATCATCAGAAGGTGCTGCAACCACCGCCAACCAGGCCGAATTTTTCACTCTAGTGAAGGAATCTCTCTCAGAAAACTTTCCTATGAACTGGAATACTAACTATACCAACAACAACCAAGGCTTCTGCAAGTTCAGTGGAGTCACATGCAACGACCAAGGTGACGTCACTGTTCTCGACTTCACCGGCTGGTCATCGCTCTCCGGAAACTTCCCCTCTTCGATATGTAACTACCTGCCAAACTTACAAATCCTTCGAATGGGTTTTACCAAGTTCAAGTTCCCAACAGAATCCATAACCAACTGCTCCAACTTGCAAGAACTCAATATGAACCACATGTTCCTATCAGCAACTCTCCCTGACTTCTCGCCATTGCAGAACCTCAGAGTCCTTGACTTGTCCTATAACCTCTTCACCGGAGACTTCCCCATGTCCGTCTTCAACCTCTCCAATCTCGAGATCATCAACTTCAACGAGAACACAGCCTTCCGTGGCTGGAAGCTTCCGGAAACCTTTGACAACTTCAAGAAGCTCAACTCCATGGTTCTAACAACTTGCTCTTTGCATGGCCAGATCCCTCCCGCGTTAGGGAACATAACAACGCTCGTTGATCTTGAACTCAGCGGAAACTACCTCACCGGACAAATTCCCAGGGAGCTTGGCCTTCTCAAGAATCTTCAAGAGCTTGAACTTTACTACAACTACCACCTCGTCGGAAACATACCTGAAGAGCTCGGGAATTTAACGGAGCTAACGGATTTGGACATGTCCGTTAACAAGTTAACCGGAAGAATCCCTGTTTCCATTTGTAAGCTTCCAAAGCTTCAAGTTCTTCAGCTCTACAACAACAGCCTCGTCGGAGAGATACCAGGTGAGTTAGAGAATTCAACTGCGTTGAGGATCTTGTCGCTTTACGACAACTTCCTGAACGGAACGGTGCCGGAAAAGCTAGGACAATTCTCCGGCATGGTGGTTCTGGACTTGTCAGAGAACAGTCTCTCCGGTCCGTTGCCGAGGGAGGTTTGCAAGGGAGGTAAGCTGTTATACTTTCTTGTACTGGATAACAACTTCTCTGGCGTGATACCTGACAGTTACGCTAACTGCATGATGCTGTTACGCTTCCGCGTGAGTAACAATCGGTTACAGGGCCCCATTCCCGAGGGCCTCCTCAGCTTGCCACACGTGTCAATCGTTGATTTGAGCAGCAACAACCTCAGCGGCGTGATTCCCGATATTAACGGTAATTCAAGAAACCTCTCTGAGCTCTTCCTACAGAGGAACATGATCTCCGGCGTGATACCGCCGTCCATCGCACGCGCTCCGAACCTCGTGAAGATTGATTTCAGCAGTAACCGTCTCTCCGGTGCTATTCCTCCCGAGATCGGAAACCTGAGGAAGCTGAATTTGCTTATGCTGCAAGGGAACAAATTGAGTGACTCCATTCCCAGTTCTCTTTCTTCTCTTTCATCTCTCAACCTTCTAGATCTTTCTAACAACCTTCTCACCGGTTCCATCCCGGAGAGCCTCTCTGTTTTATTGCCCAACTCTATTAATTTCTCGCACAATCTTCTCTCCGGTCCCATTCCTCCCAAACTCATCAAGGGAGGATTGGTGGAAAGCTTCTCCGGGAACCCTGGGTTGTGTGTTCTTCCATCCTCTAACTCTTCTGATGATCAGAGCTTCCCTCTCTGCAACTCACGCGAGTACAAGAGCAAGAGAGTCAACACTATTTGGGTGGCTGGAATCTCCGTGGTCTTAATCTTTGTTGGTGCCATGCTGTTCTTGAAACGCAGGTGCAGTAAAGAAACAGCTGCGGTTGAACACGACGAGACGCTTTCTTCGTCGTTCTTCTCTTACGACGTGAAGAGCTTCCATAGAATTAGTTTTGATCAGAGAGAGATAATCGAGTCGTTGGTGGACAAGAACATAATGGGGCACGGAGGGTCAGGAACGGTGTACAGAATAGAGCTGAAAAGCGGCGATGTTATCGCAGTTAAGAGGCTGTGGAGCACGAAATCGAAGGACGATTCGGGTGCGGCGGAGGAGCGGTTAGTTGTGGACAGAGCATTGAAGGCGGAGGTGGAGACATTAGGGAGCATAAGGCACAAGAACATAGTGAAACTTTATTGTTGCTTCTCAAGTATGGATTGTAGCTTGCTTGTTTATGAATACATGCCTAATGGGAACTTGTGGGATGCTCTTCACAAAGGGTGCATTGAATTGGATTGGCCTACACGCTACCAGATTGCCCTTGGGATTGCTCAGGGTCTCGCTTACCTTCACCATGATTTGGTTTTTCCTGTCATACATAGAGATATCAAATCTACCAACATACTCTTGGATGTTGATAACCACCCTAAGGTTGCAGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAGGAGCCAAAGATTCCACCACTACTGTTATTGCTGGAACTTACGAATATGCATATTCACCAAGGGCCACTACAAAGTGTGATGTGTACAGTTTTGGTGTGATTCTAATGGAGCTTCTGACTGGTAGAAAGCCAGTGGAGGCTGAATTTGGAGAGAACAGGAACATAGTGTTTTGGGTGTCAAACAAAGTTGAAGGCAAAGAAGGTGCAAGACCAAGTGAAGTTTTTGATCGAAGATTATCAAATTCGTTCATAGATGACATGATTAAGGTCCTTAGGATTGCAATTAGGTGCACCTACAAAGCACCATCTAGTAGACCAACCATGAAGGAGGTTGTTGAGCTTCTCATTGAGGCAGAGCCATGCAAGTTACCATCAAATAATAATGTCACCATAATAAAGAAACCCTATGAAGTATAA 2865 0.4646 MDRPFILFMIGVIFVFSSSEGAATTANQAEFFTLVKESLSENFPMNWNTNYTNNNQGFCKFSGVTCNDQGDVTVLDFTGWSSLSGNFPSSICNYLPNLQILRMGFTKFKFPTESITNCSNLQELNMNHMFLSATLPDFSPLQNLRVLDLSYNLFTGDFPMSVFNLSNLEIINFNENTAFRGWKLPETFDNFKKLNSMVLTTCSLHGQIPPALGNITTLVDLELSGNYLTGQIPRELGLLKNLQELELYYNYHLVGNIPEELGNLTELTDLDMSVNKLTGRIPVSICKLPKLQVLQLYNNSLVGEIPGELENSTALRILSLYDNFLNGTVPEKLGQFSGMVVLDLSENSLSGPLPREVCKGGKLLYFLVLDNNFSGVIPDSYANCMMLLRFRVSNNRLQGPIPEGLLSLPHVSIVDLSSNNLSGVIPDINGNSRNLSELFLQRNMISGVIPPSIARAPNLVKIDFSSNRLSGAIPPEIGNLRKLNLLMLQGNKLSDSIPSSLSSLSSLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFSGNPGLCVLPSSNSSDDQSFPLCNSREYKSKRVNTIWVAGISVVLIFVGAMLFLKRRCSKETAAVEHDETLSSSFFSYDVKSFHRISFDQREIIESLVDKNIMGHGGSGTVYRIELKSGDVIAVKRLWSTKSKDDSGAAEERLVVDRALKAEVETLGSIRHKNIVKLYCCFSSMDCSLLVYEYMPNGNLWDALHKGCIELDWPTRYQIALGIAQGLAYLHHDLVFPVIHRDIKSTNILLDVDNHPKVADFGIAKVLQARGAKDSTTTVIAGTYEYAYSPRATTKCDVYSFGVILMELLTGRKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDRRLSNSFIDDMIKVLRIAIRCTYKAPSSRPTMKEVVELLIEAEPCKLPSNNNVTIIKKPYEV 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00044 954 PANTHER RECEPTOR-LIKE PROTEIN 55 301 931 - -
Stsc60423g00044 954 FunFam Receptor protein-tyrosine kinase CEPR1 288 573 - -
Stsc60423g00044 954 Pfam Leucine rich repeat 409 469 IPR001611 GO:0005515
Stsc60423g00044 954 Gene3D Ribonuclease Inhibitor 180 284 IPR032675 -
Stsc60423g00044 954 FunFam Leucine-rich repeat receptor-like protein kinase 179 284 - -
Stsc60423g00044 954 Gene3D Ribonuclease Inhibitor 27 179 IPR032675 -
Stsc60423g00044 954 ProSiteProfiles Protein kinase domain profile. 654 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60423g00044 954 SUPERFAMILY L domain-like 42 250 - -
Stsc60423g00044 954 SUPERFAMILY L domain-like 366 565 - -
Stsc60423g00044 954 SUPERFAMILY L domain-like 185 426 - -
Stsc60423g00044 954 Gene3D Phosphorylase Kinase; domain 1 637 740 - -
Stsc60423g00044 954 SMART LRR_typ_2 336 360 IPR003591 -
Stsc60423g00044 954 SMART LRR_typ_2 504 528 IPR003591 -
Stsc60423g00044 954 SMART LRR_typ_2 141 165 IPR003591 -
Stsc60423g00044 954 SMART LRR_typ_2 288 312 IPR003591 -
Stsc60423g00044 954 SMART LRR_typ_2 480 503 IPR003591 -
Stsc60423g00044 954 SMART LRR_typ_2 408 431 IPR003591 -
Stsc60423g00044 954 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 741 938 - -
Stsc60423g00044 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Stsc60423g00044 954 Gene3D Transferase(Phosphotransferase) domain 1 741 945 - -
Stsc60423g00044 954 FunFam receptor protein-tyrosine kinase CEPR1 637 740 - -
Stsc60423g00044 954 Pfam Protein kinase domain 656 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60423g00044 954 SUPERFAMILY Protein kinase-like (PK-like) 640 931 IPR011009 -
Stsc60423g00044 954 Gene3D Ribonuclease Inhibitor 298 575 IPR032675 -
Stsc60423g00044 954 SMART serkin_6 654 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00044 Stsc-Chr60423 326135 329808 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00044 19 936 Receptor kinase-like Gene Family AT5G49660 62.352 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60423g00044 Pkinase 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00044 - - gmx:100785822 1427.15