Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00039 ATGCTTTCGGGTCCGATTCCACCTGACATGTGCAAGAAGGGGAAAATGACTGCTCTGTTAATGCTTCAGAACAAGCTCACGGGACCAATACCGGAAACCTACGCTTCCTGTAACAGTCTTAACCGTTTCAGAGTCAGCAACAACTCCCTCTCCGGTTCCGTACCGGTAGGACTTTGGGGACTTCCAAACGCTGAAATCATAGATATTGAACTCAACAATCTAGAAGGTTCGGTTGCCTCTGAAATCAAGAGCGCGAAGAATTTGGCTCAGATATACGCCCGGAAGAACCGGTTATCCGGTGAGATACCGAAGGAGATTTCTGAAGCGAGTTCGTTAGTCACTATTGATCTCAGCGAGAATCAAGTTTCCGGTGAGATTCCAGATTCAATTGGCGGATTGAAACAACTTGGAAGCCTTTATTTGCAGAAGAATCAGTTAACTGGATCGATACCTGAGTCTTTAGGTTCTTGCATTTCGCTGAACGACGTTGATTTATCGATGAACTCGCTCTCCGGCAAGATTCCTTCTTCGTTGGGATCTCTACCGGCTCTGAACTCGCTTAACATGTCGAGGAACCAATTGTCCGGCGAGATTCCGGCGAGTTTGGCGTTGCTGAGATTGAGCCTCTTTGATTTATCGGAGAATAAGTTGACCGGGGAAATTCCTCAGGCTCTTACGATTCAAGCTTACAATGGAAGCCTCGCCGGAAACCCTGGACTCTGCAGCGTCGACTTGATCGGTTCATTCCCTCGGTGCTCCAAGAATTCCGGCATGTCAAAAGGTGTTCGTACAATTGTGGTTTGCATTCCAATTCTGTTGGTTTTGGTTATGCTGTGTTTGGCGCTTTACTTGAAAAAGAAGAACAAGAAAGTGAGTTATGGTGGAGGAGGGCGTTCTCTTAAAGAAGAGTATTCATGGGACGTGAAATCCTTCCATGTTCTAAGCTTCACAGAAGATGAGATTCTTGATTCCATCAAGCAAGAGAATCTTATTGGAAAAGGAGGATCAGGGAATGTTTACAGGGTTACATTGTCCAATGGGAAAGAACTTGCTGTTAAGCATATATGGAACACCGATATCGATTCGAGGACGAAGAAGTCCAGATCATGGAGCAGTGGTAGCGGTAGCGGAACGCCAATGCTCGCTGGAAAGCGCACCGGGAAGTCCAAGGAGTTTGATGCAGAGGTGCAGGCATTGAGCTCCATAAGGCATGTGAATGTGGTGAAGCTGTATTGTAGCATAACAAGTGAGGATTCAAATCTTTTGGTTTATGAGTACTTGCCTAATGGAAGCTTGTGGGATAGGCTTCACACCAGTGGAAAGATGGAGCTTGATTGGGAGACAAGGTACGAGATTGCAGTGGGTGCTGCCAAGGGATTGGAGTACTTGCATCATTCATGTGAGAGGCCTGTTATTCACAGGGATGTTAAGTCTAGTAACATCTTGCTTGATGAGTTCTTGAAGCCTCGGATTGCGGATTTCGGTTTGGCTAAGATTGTTCAAGCTAATGTTGCAAAGGATTCTACTCATGTTATTGCAGGAACACATGGTTACATTGCTCCTGAATATGGTTACACTTACAAGGTTAATGAGAAGAGTGATGTATACAGTTTTGGGGTTGTGTTGATGGAGTTAGTGACAGGTAAGAAGCCAATTGAAGCAGAATTTGGTGAAAACAAAGACATAGTGAGTTGGGTCCATAGCAAAGCACAGAACAAAGAAATGTTTGGGAGTGTTGTGGACTCAAGAATCCCAGAGATGTATAAGGAAGAAGCTTGCAAGGTGCTAAGAACTGCAGTTCTATGCACAGCAACTCTTCCAGCTATGAGGCCTACAATGAGAGCAGTGGTTCAGATGCTTGAAGATGCTGAGCCTTGTAAATTGGTTGGAATTGTTATAAGCAAAGATGGCAGCCAAAAGAAAATCACAGCCAATGCCAAATAG 1944 0.4496 MLSGPIPPDMCKKGKMTALLMLQNKLTGPIPETYASCNSLNRFRVSNNSLSGSVPVGLWGLPNAEIIDIELNNLEGSVASEIKSAKNLAQIYARKNRLSGEIPKEISEASSLVTIDLSENQVSGEIPDSIGGLKQLGSLYLQKNQLTGSIPESLGSCISLNDVDLSMNSLSGKIPSSLGSLPALNSLNMSRNQLSGEIPASLALLRLSLFDLSENKLTGEIPQALTIQAYNGSLAGNPGLCSVDLIGSFPRCSKNSGMSKGVRTIVVCIPILLVLVMLCLALYLKKKNKKVSYGGGGRSLKEEYSWDVKSFHVLSFTEDEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDIDSRTKKSRSWSSGSGSGTPMLAGKRTGKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTSGKMELDWETRYEIAVGAAKGLEYLHHSCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVAKDSTHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKKPIEAEFGENKDIVSWVHSKAQNKEMFGSVVDSRIPEMYKEEACKVLRTAVLCTATLPAMRPTMRAVVQMLEDAEPCKLVGIVISKDGSQKKITANAK 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00039 647 SUPERFAMILY L domain-like 3 245 - -
Stsc60423g00039 647 Pfam Leucine rich repeat 138 194 IPR001611 GO:0005515
Stsc60423g00039 647 Pfam Protein kinase domain 327 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60423g00039 647 ProSiteProfiles Protein kinase domain profile. 325 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60423g00039 647 Gene3D Phosphorylase Kinase; domain 1 308 426 - -
Stsc60423g00039 647 FunFam Leucine-rich repeat receptor protein kinase EMS1 152 234 - -
Stsc60423g00039 647 MobiDBLite consensus disorder prediction 364 386 - -
Stsc60423g00039 647 Gene3D Ribonuclease Inhibitor 1 254 IPR032675 -
Stsc60423g00039 647 Gene3D Transferase(Phosphotransferase) domain 1 427 630 - -
Stsc60423g00039 647 FunFam Leucine-rich repeat receptor protein kinase EMS1 59 151 - -
Stsc60423g00039 647 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 427 635 - -
Stsc60423g00039 647 SUPERFAMILY Protein kinase-like (PK-like) 314 621 IPR011009 -
Stsc60423g00039 647 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Stsc60423g00039 647 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 621 - -
Stsc60423g00039 647 FunFam Receptor-like protein kinase HAIKU2 308 426 - -
Stsc60423g00039 647 SMART serkin_6 325 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60423g00039 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00039 Stsc-Chr60423 308730 312335 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00039 1 640 Receptor kinase-like Gene Family AT1G09970 62.733 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60423g00039 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00039 - - gmx:100779554 970.689