Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00029 ATGTCACCGCCGGCATTCAGCATAGCGGGGGAGGAGGAGGAAGAGGAGGAGGAGGGAAAAAGCAATGTCAATTTGTTGGTTTCGGAGTTGAAAGAGCGAAACTACATGGACTGGTCCGGTTGTTCTTCCGGTGACAGCTCGGTTTCGCCGTTACCGGATGAGCATAAGAGTAGTCTGAACCTGAAAGCTACTGAACTCAGGCTTGGTCTCCCGGGATCTGAGTCTCCTGAGAGAGATTCTGATCATTGCTTAAGAAGCTCAACTCAGTTTGATGAGAAATCTCTGTTCCCCTTGTGCCTCTCCATAGATGATCATCATAATTCCCCGGCAAAGGCCGCGGTTTTGGGTAACAAAAGAGGGTTCTCGGATGTAATGAACGGGTTCCCGGAGGCTAAATTCTTGTCTAATTCAGGAGTGAATACAATTCTGTCACCGAGGCCTTCTTCTAACTTGGGATTAAATCCTGGTTCTATGCTTGAGAATCTTGGGGTTCAACAAGCCAAAATGAAAGAAGTATCAACTACAAATGTTGGTGTCGAGAAGCCTCACGCTTTCGATGAGACGAAGAAAAGTCTTAATGGTTCTGCGAATAATAATAGCAGTGCACCAGCTACCAAGGCACAGGTTGTGGGGTGGCCTCCTATAAGATCATTTAGGAAGAATTCGCTGTCAACTTACTCGAAAAACACCGAAGAAGTAGATGGAAAACCAGGGGCTAGTGCACTGTTTGTCAAGGTCAGTATGGATGGGGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCGAAGTACCCGGAACTATGTTCTGCTCTAGAGAAGATGTTCAGCTGTTTTACTATAAGTCAATGCGGATCTTATGGGACTCTGGGAAAGGAGGTGCTGAATGAAACCAAGCTGAAGGATCTTCTTCACGGATCGGAATATGTTCTTACTTATGAAGACAAAGACAGTGATTGGATGCTTGTTGGTGACGTTCCATGGGAGATGTTTATCGAAACATGCCGGAGGCTGAGGATCATGAAGAGTTCTGAAGCAATTGGGCTTGCTCCCAGGGCTGTTGAAAAAAGCAAGAGCAGGAACTAG 1086 0.4595 MSPPAFSIAGEEEEEEEEGKSNVNLLVSELKERNYMDWSGCSSGDSSVSPLPDEHKSSLNLKATELRLGLPGSESPERDSDHCLRSSTQFDEKSLFPLCLSIDDHHNSPAKAAVLGNKRGFSDVMNGFPEAKFLSNSGVNTILSPRPSSNLGLNPGSMLENLGVQQAKMKEVSTTNVGVEKPHAFDETKKSLNGSANNNSSAPATKAQVVGWPPIRSFRKNSLSTYSKNTEEVDGKPGASALFVKVSMDGAPYLRKVDLKNYSKYPELCSALEKMFSCFTISQCGSYGTLGKEVLNETKLKDLLHGSEYVLTYEDKDSDWMLVGDVPWEMFIETCRRLRIMKSSEAIGLAPRAVEKSKSRN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00029 361 MobiDBLite consensus disorder prediction 39 54 - -
Stsc60423g00029 361 ProSiteProfiles PB1 domain profile. 241 343 IPR000270 GO:0005515
Stsc60423g00029 361 MobiDBLite consensus disorder prediction 39 60 - -
Stsc60423g00029 361 Gene3D - 237 355 - -
Stsc60423g00029 361 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60423g00029 361 SUPERFAMILY CAD & PB1 domains 240 342 - -
Stsc60423g00029 361 Pfam AUX/IAA family 64 352 IPR033389 -
Stsc60423g00029 361 FunFam Auxin-responsive protein 236 353 - -
Stsc60423g00029 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 348 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00029 Stsc-Chr60423 185110 188971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00029 255 346 B3 DNA Binding Superfamily AT1G19220 32.609 7.30e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc60423g00029 AUX_IAA 2.1e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00029 K14484 - gmx:100815447 506.908