Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00026 ATGGAGCTCTATTATGATGATAATGACCATGATTTCTTAGAGGAATTAATGGCTCTAAGAAGAGAAACCTTGGAAACCAACAACAACAACAACCACCACTTCTTCTCCAACAATGGCGGCTCCAACACCTGGAATAATAATAATAGTAGCAACACTTTTGATTGTTATTATTACGATCAAAACTCACTATCTTCTTTTCCTCCAAACTCTTCTTCTTCTTACCATGAAGATCTTCTTCTTCCTCATGATGATCAAATTTACAATAATCACAACATGTTCAATGAAATAATATATGATGATTCATTGTTGTTAGATGAACAATCCCCGCCATTGATAATGGATCATCATCATTCTTCCTACGCCAGCAGCAACCTTGATACTCCTCCGTTTCTTGCTCAAGAAGATTGTTGTTACCCTCCATTGTCTTTGATGGAAGAAGAGGAGTACAATAACTATAATAATGGATATAATGGATTGCTTCTTGAAGAGGAGCTTCAGAATTTGTTGGAGATTCAAACTACAACACCAACAACAAAGTGCAAAGTGGAGCCATCTGTAATAGCTTGTGATGATTCTTCTCAGTCCCCTACTGCTCCAATTTTCAACGCAGATTCTGTTATGGGAAATGAAATTAGAAAGAACAGATCTTCAAAGAAGATTCTAGGTCAACCCTCCAAGAATCTAATGGCGGAAAGGAGAAGAAGAAAGAGACTCAATGATAGACTCTCAATGCTAAGAGCCATTGTCCCTAAGATTAGTAAGATGGATAGAACATCTATTCTTGGAGACACCATTGATTACATGAAAGAGCTTCTAGAGAAGATCAACAATTTGCAACAACAAGAAGTAGTGAAAGTTGAGGATTCAAACATGGCAGAAGCCATTTTCAAAGATGTGAAGCGACCAAATGAAATCTTGATTAGAAATTCACCAAAGTTTGAGGTTGAAAGGGGTGTGGATAATAATACAAGGGTTGAGATTTGCTGTGCGGGGAAGCCAGGGTTGTTGCTATCAACAATTAACACCATGGAAGCATTAGGTCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGTTTCTTGCACAGAGGAAGTGGAACAAAGGGCAATGGTGAGTTCTGAAGATATAAAGCAAGCTTTATTTAGAAGCGCTGGATATGGAGGAAGATGTTTGTGA 1194 0.3769 MELYYDDNDHDFLEELMALRRETLETNNNNNHHFFSNNGGSNTWNNNNSSNTFDCYYYDQNSLSSFPPNSSSSYHEDLLLPHDDQIYNNHNMFNEIIYDDSLLLDEQSPPLIMDHHHSSYASSNLDTPPFLAQEDCCYPPLSLMEEEEYNNYNNGYNGLLLEEELQNLLEIQTTTPTTKCKVEPSVIACDDSSQSPTAPIFNADSVMGNEIRKNRSSKKILGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQQEVVKVEDSNMAEAIFKDVKRPNEILIRNSPKFEVERGVDNNTRVEICCAGKPGLLLSTINTMEALGLEIQQCVISCFNDFTMQVSCTEEVEQRAMVSSEDIKQALFRSAGYGGRCL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00026 397 SMART finulus 228 277 IPR011598 GO:0046983
Stsc60423g00026 397 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 392 - -
Stsc60423g00026 397 Gene3D - 230 300 IPR036638 GO:0046983
Stsc60423g00026 397 Pfam Helix-loop-helix DNA-binding domain 228 271 IPR011598 GO:0046983
Stsc60423g00026 397 Coils Coil 261 281 - -
Stsc60423g00026 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Stsc60423g00026 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 281 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00026 Stsc-Chr60423 164022 166017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00026 210 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.362 8.07e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60423g00026 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00026 - - gmx:100812578 347.051