Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00019 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACGAGCAGGCAAGTGACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATTCTTTGCGATGCTGAGGTTGGAGTTACGATCTTCTCCAGCACCGGAAAACTCTATGAGTACGCCAGTACCAGCATGAAATCAGTGATTGATCGATACAACAAAACAAAAGAGGAGCATAACCCACTTGGAAGTTCAACGTCTGAGATTAAGGTATTTATGTTAGTGCTTATTAATCCCCTTTTTATTAACTAA 303 0.4422 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVTIFSSTGKLYEYASTSMKSVIDRYNKTKEEHNPLGSSTSEIKVFMLVLINPLFIN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00019 100 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc60423g00019 100 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60423g00019 100 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60423g00019 100 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Stsc60423g00019 100 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60423g00019 100 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60423g00019 100 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60423g00019 100 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc60423g00019 100 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 76 - -
Stsc60423g00019 100 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60423g00019 100 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Stsc60423g00019 100 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00019 Stsc-Chr60423 98574 105958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00019 1 90 MADS-box Gene Family AT2G14210 79.121 2.31e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc60423g00019 SRF-TF 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00019 K09264 - qsa:O6P43_015429 152.525