Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00018 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACGAGCAGGCAAGTGACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATTCTTTGCGATGCTGAGGTTGGAGTTACGATCTTCTCCAGCACCGGAAAACTCTATGAGTACGCCAGTACCAGCATGAAATCAGTGATTGATCGATACAACAAAACAAAAGAGGAGCATAACCCACTTGGAAGTTCAACGTCTGAGATTAAGGTCTGGTTACCTTCGTGGTAG 282 0.4787 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVTIFSSTGKLYEYASTSMKSVIDRYNKTKEEHNPLGSSTSEIKVWLPSW 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00018 93 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc60423g00018 93 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60423g00018 93 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Stsc60423g00018 93 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60423g00018 93 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60423g00018 93 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60423g00018 93 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60423g00018 93 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc60423g00018 93 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Stsc60423g00018 93 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 75 - -
Stsc60423g00018 93 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60423g00018 93 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00018 Stsc-Chr60423 98574 106467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00018 1 89 MADS-box Gene Family AT2G14210 81.111 7.77e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc60423g00018 SRF-TF 3.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00018 K09264 - qsa:O6P43_015429 156.377