Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00010 ATGAAGACTCAACTGGGGGTGCAACTCACCATTGAAGATAGTCATGTGGTGATGGAGAATGGGATAGTAATAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCTACAAGTTCAGGAACCACTGGCAAATTTGACGTGATAAAGGGAACGGCTTTCAAAGTGATAGTTGCAAATGAGGATCAAGTTGAGATTTCCTTCACTAGAACATGGGACGTCTCCCTCAAAGACCATCTCGTTCCTTTGAATATCGATAAAAGGTTCCGTTATATGGCAATGGCGGATAACAGACAAAGGAACATGCCTCTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATACCCTGAAGCTGTTCTTCTTCTCGATCCGGTCGAACCCGAACTCAAGGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGGTGGGTGTGTACGGATCCTGCCGTTGGATTTTGGCTAATTACGCCCAGCAACGAGTTCCGTTCTGGTGGGCCCCTCAAACAAAACCTAACTTCCCACGTTGGACCCACTACTCTCGCTGTGTTTCTAAGTGCCCATTATAGTGGAGAGGACTTGGTGCCAAAATTCAAAGAAGGAGAGGGATGGAAGAAGGTTTTTGGTCCTGTTTTCATCTATTTGAATTCTCCTAATGATAATAATACTAGTGATGATGACCCCCATAAAATGCTCTGGGAAGATGCTAAACTCCAGATGAATGTGGAAGTAGAAAGTTGGCCTTACACTTTTCCAGAATCAGAGGATTACCCAAAGTGGTATGAACGTGGTATTGTTAATGGCAGGCTATTAGTTAAAGAGAGGTATATTAGCGATGATGACTGTATAGCAGCAAAAGGAGCATATGTTGGTTTGGCTCCCCCTGGAGAAGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTAAAGCGGATGAAGATGGCTATTTCTCCATCAGCAATGTTCGTGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATATGATTCAGTTATAACCATAGCACAAGGGTCTCCTACTTACATTGAATTGGATGATCTTGTTTATGAGCCTCCAAGAGATGGACCAACACTATGGGAAATAGGGATTCCAGATCGTACAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTATGTTAATCATCCTCATAAATTTAGGCAATATGGATTATGGGAGAGATATGCAGAATTGTACCCTGACAGAGATTTAATCTATACAGTTGGAGCTAGTGATTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAATACATATGTAGGATCCACTTGGCAGATCAAGTTTCAGCTTTCCAATGTAAATAAAACTGCTACCTATAAATTGCGCCTTGCTTTAGCCTCAGCTACTTTTGCTGAACTCCAGGTGCGAGTTAATGATCCAAAGGCAAATCGTCCTCTATTCACAAGTGGGTTGATAGGAAGAGATAACTCAATTGCAAGGCATGGAATTCATGGACTCTATTGGCTTTTCAATGTGGACATTCAAGGAACCAAACTTGTTGAAGGAGATAACACCATTTTTCTAACACAAACTAGAGCCAATAACCCTTTTCAGAACATTATGTATGATTACATTCGTTTGGAAGCTCCACCACGACCCTCTAGCTAG 1827 0.4182 MKTQLGVQLTIEDSHVVMENGIVIVTISNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDLVWSSPTSSGTTGKFDVIKGTAFKVIVANEDQVEISFTRTWDVSLKDHLVPLNIDKRFRYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLLLDPVEPELKGEVDDKYQYSCDNKDSQVHGWVCTDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKEGEGWKKVFGPVFIYLNSPNDNNTSDDDPHKMLWEDAKLQMNVEVESWPYTFPESEDYPKWYERGIVNGRLLVKERYISDDDCIAAKGAYVGLAPPGEVGSWQRECKNYQFWSKADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYDSVITIAQGSPTYIELDDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPHKFRQYGLWERYAELYPDRDLIYTVGASDYTKDWFFAQVTRKKDDNTYVGSTWQIKFQLSNVNKTATYKLRLALASATFAELQVRVNDPKANRPLFTSGLIGRDNSIARHGIHGLYWLFNVDIQGTKLVEGDNTIFLTQTRANNPFQNIMYDYIRLEAPPRPSS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00010 608 SUPERFAMILY Galactose-binding domain-like 409 601 IPR008979 -
Stsc60423g00010 608 Gene3D - 6 265 IPR014718 GO:0030246
Stsc60423g00010 608 Pfam Polysaccharide lyase family 4, domain III 412 600 IPR029411 -
Stsc60423g00010 608 CDD RGL4_M 300 397 IPR029413 -
Stsc60423g00010 608 Pfam Rhamnogalacturonate lyase family 7 117 IPR010325 -
Stsc60423g00010 608 Gene3D - 301 399 - -
Stsc60423g00010 608 SUPERFAMILY Starch-binding domain-like 340 397 IPR013784 GO:0030246
Stsc60423g00010 608 CDD RGL4_N 9 255 - -
Stsc60423g00010 608 CDD RGL4_C 414 601 - -
Stsc60423g00010 608 Gene3D - 410 601 - -
Stsc60423g00010 608 Pfam Polysaccharide lyase family 4, domain II 324 395 IPR029413 -
Stsc60423g00010 608 FunFam Rhamnogalacturonate lyase B 297 397 - -
Stsc60423g00010 608 SUPERFAMILY Galactose mutarotase-like 9 258 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc60423g00010 608 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 116 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00010 Stsc-Chr60423 63963 69474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00010 7 603 Polysaccharide Lyase AT1G09890 67.141 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00010 K18195 - gmx:100814721 1030.78