Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60423g00009 ATGGTGGTAGAAGAAGATAGACAAAGATTTATGCCTCTTCCTGATGATAGGGAAGAAGGAAGAGGCCAAGTTCTTGCTTACCCAGAAGCTGTCTTGCTTATCAATCCTATTGAGCCTCAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCAATTGAGAGTAGAAAGAACCAAGTTCATGGTTGGATATCCATGGATCCACCACAATCCACTGGGTTCTGGATCATCACCCCAAGCAATGAGTTCAGATCCGGTGGCCCTCTTAAACAGTACCTTGCTTCTCACGTCGGCCCAACAGCCCTCTCCGTATTTCATAGTACGCACTATTCAGGGGTGGATTTGATAATGAGGTTTGGGCCCAACGAGTCATGGAAGAAAGTATATGGGCCCATATTTATATATCTCAATTCACTCTCTAATGGAGAAAGCCCAACTAAGCTCTGGGACGACGCCAGGCAACAGACGGTGAATGAAATTGAAAGCTGGCCATATAGGTTTCCAGCTTCGAAGGATTTTTTGAAAGCTGAGGAAAGAGGTAAACTTGAAGGAAGATTGCTTGTCCATGATAGGTACATAAGTGATGCATTCATCCCAGTTAGCAGTGCTTATGTGGGATTAGCTTCTCCAGGAGAGCCTGGGTCCTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACAATTACTGATGATAAAGGTTATTTCTCAATTAATAACATACTCCCTGGGAACTATAGTCTCTACTCATGGGTCAAAGGATATATTGGTGACTATAAATATGATAAAGTCATTAACATAACTTCAGGGAGTGAAGTAAATGTGGGTGAAGTTGTTTATGAGCCACCAAGAGAAGGTTCAACTTTGTGGGAAATAGGTATACCTGATCGTTCTGCTGCTGAATTCTATGTTCCAGACCCTAATCACAAATACATTAATAGACTTTATCTCAACCATACAGATAGGTATAGGCAATATGGGTTGTGGGAGAGATATGCTGATTTATATCCAAAAGAAGACTTAGTATACAATGTTAGCACAAGTGACTATACAAAAGATTGGTTCTTTGCTCAGGTCAACAGGAAGGAGGAGGAGATAAATAACACATACGAAGCAACCACTTGGCAAATTAATTTCAATTTGGAAAATGTAATTGCCAATGGAACTTACAAATTGCGAGTGGCTCTGGCCTCTGCACATTTTGCTGAGTTGCAGATTCGGGTGAACAATAATTCAGAAGGAAATCCAGCATTATTTAGAAGTGGAGTTATTGGATCAGAAAACACCATAGCTAGACATGGAATTCATGGCTTCTATTGGCTCTTCAATGTTGATATTGAAGGCACTCTTCTTGGGCAGGGAAATAATTCATTATTTCTTTCACAGCCCAATAATACAAGTCCTTTTCAGGGAATTTTGTATTGGGACATTGTTTGGAATGAAGCAGATAGCACAGGAACAACTGGGATATATCAACGGGTGGTAGGGACAAGTTATAAAGTGATAGTGCAAAATGATGAACAATTGGAGATTTCATTCACCACAACATGGAATCCATCTTCCATGGAGGAAAAGCAATCTCCTCTAAATATTGACATTAGGTATGTGATGGTACGCAATTCCATTGGTTTGTATTGTTATGGCATTTTTGAACATAGAAAAGAATGGCCTGCTTTCAACATACCCCAAATCAGAATGGTCTTCAAGCTTCGAAAAGATAAGTTTGATTATATGGCTATAGGGGACAATAAGCAAAGATTAATGCCTGTTCCAGATGACAGGTTACCACCCAGAGGAAAAACACTTTCTCCACCTGAAGCTGTCTTGCTTCTTGACCCAATTGAACCACGCTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGCGATAACAAAGATATTAAGGTGCATGGATGGATAACCTCCAAATCTGAAACTAATCCTGCAATGGGTTTTTGGATAATTATACCAAGCAATGAGTTCCAATCAGGTGGCCCTCTCAAACAGAACCTCACCTCTCATGTAGGCCCCATTAGTCTTGCAATGTTTCAGAGTTCTCATTATGCAGGAGAGGATTTAGTAGTGAGAGTCCAAAGAAATGAGTCATGGAAAAAGGTTTTTGGGCCAATCTTTGTTTACCTTAACACTATTACTACTTCATCAGAAAACCAGCAAGTCCAACCATGGCTATGGAAGGATGCCAAAGATCAGATGAGGAAACAAGTTCAAAGGTGGCCCTATGATTTTCCAGCTTCAGGGGATTTTCACAAGTCTCACCAACGAGGCACTGTTTATGGCACATTAAAAGTCCAAGATAGGTTCATAAGTGATGAGAAGATATTGGCAAAAGGTGCATATGTTGGTCTGGCACCACCAGGAGCAGCTGGATCCTGGCAAACAGAATGTAAAGGATATCAATTTTGGAGTCAAACCAATAAAAGAGGCTTCTTCTCCATTAACAACGTACTTAGTGGGAGTTACAATCTTTTTGCTTGGGTCCCTGGTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACAATAAACCCAGGAAGTAAAATAAATGTTGGTGAGATTGTATATAAACCCCCAAGAGATGGACCAACTTTATGGGAAATAGGCATTCCCGATCGCTCTGCTTCTGAATTCTATGTTCCTGATCCCAATCCAAATTATGTTAACAAACTTTATCTCAATCATCCAGAGAGGTTTAGACAGCATGGCTTATGGGAAAGATATGCAGATTTATATCCAAATGAAGATTTGATTTACACTGTTGGACACAGTGACTATAGAAAACATTGGTTCTTTGCCCATGTTACCAGGAAGAAAGATGATGGCAGTTACCATGGAACAACATGGCAAATTAAGTTCAAGCTTTATAATGTGCAGAGAAATGGAACTTATAAGTTGCGGCTTGCACTTGCGACCGCAAATTTTTCCGAATTACAGGTTAGAGTGAATAATCCAAAAGAAGATCCACCAATGTTTACAAGTGGAGCGATTGGGAAGGAAAACACCATAGCTAGACATGGAATTCATGGACTCTATAGACTATACAACATTGATGTATCATCTCATTTACTAGTGAAAGATGAAAATATCATATTTCTTACACAAACTATGGCTAATGGTCCCTTTGAAGGTATAATGTATGACTATATTCGTTTAGAAGCTCCACCTCCTCATAAGAGACAAGATTAA 3204 0.3979 MVVEEDRQRFMPLPDDREEGRGQVLAYPEAVLLINPIEPQFKGEVDDKYQYSIESRKNQVHGWISMDPPQSTGFWIITPSNEFRSGGPLKQYLASHVGPTALSVFHSTHYSGVDLIMRFGPNESWKKVYGPIFIYLNSLSNGESPTKLWDDARQQTVNEIESWPYRFPASKDFLKAEERGKLEGRLLVHDRYISDAFIPVSSAYVGLASPGEPGSWQRESKGYQFWTITDDKGYFSINNILPGNYSLYSWVKGYIGDYKYDKVINITSGSEVNVGEVVYEPPREGSTLWEIGIPDRSAAEFYVPDPNHKYINRLYLNHTDRYRQYGLWERYADLYPKEDLVYNVSTSDYTKDWFFAQVNRKEEEINNTYEATTWQINFNLENVIANGTYKLRVALASAHFAELQIRVNNNSEGNPALFRSGVIGSENTIARHGIHGFYWLFNVDIEGTLLGQGNNSLFLSQPNNTSPFQGILYWDIVWNEADSTGTTGIYQRVVGTSYKVIVQNDEQLEISFTTTWNPSSMEEKQSPLNIDIRYVMVRNSIGLYCYGIFEHRKEWPAFNIPQIRMVFKLRKDKFDYMAIGDNKQRLMPVPDDRLPPRGKTLSPPEAVLLLDPIEPRFKGEVDDKYQYSSDNKDIKVHGWITSKSETNPAMGFWIIIPSNEFQSGGPLKQNLTSHVGPISLAMFQSSHYAGEDLVVRVQRNESWKKVFGPIFVYLNTITTSSENQQVQPWLWKDAKDQMRKQVQRWPYDFPASGDFHKSHQRGTVYGTLKVQDRFISDEKILAKGAYVGLAPPGAAGSWQTECKGYQFWSQTNKRGFFSINNVLSGSYNLFAWVPGFIGDYCNNVVLTINPGSKINVGEIVYKPPRDGPTLWEIGIPDRSASEFYVPDPNPNYVNKLYLNHPERFRQHGLWERYADLYPNEDLIYTVGHSDYRKHWFFAHVTRKKDDGSYHGTTWQIKFKLYNVQRNGTYKLRLALATANFSELQVRVNNPKEDPPMFTSGAIGKENTIARHGIHGLYRLYNIDVSSHLLVKDENIIFLTQTMANGPFEGIMYDYIRLEAPPPHKRQD 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60423g00009 1067 SUPERFAMILY Galactose-binding domain-like 285 473 IPR008979 -
Stsc60423g00009 1067 Pfam Rhamnogalacturonate lyase family 473 621 IPR010325 -
Stsc60423g00009 1067 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Stsc60423g00009 1067 FunFam Rhamnogalacturonate lyase B 757 856 - -
Stsc60423g00009 1067 Gene3D - 757 856 - -
Stsc60423g00009 1067 Gene3D - 176 275 - -
Stsc60423g00009 1067 CDD RGL4_C 289 473 - -
Stsc60423g00009 1067 CDD RGL4_N 473 716 - -
Stsc60423g00009 1067 CDD RGL4_C 871 1058 - -
Stsc60423g00009 1067 SUPERFAMILY Starch-binding domain-like 177 275 IPR013784 GO:0030246
Stsc60423g00009 1067 CDD RGL4_M 178 275 IPR029413 -
Stsc60423g00009 1067 Gene3D - 478 729 IPR014718 GO:0030246
Stsc60423g00009 1067 Gene3D - 35 150 IPR014718 GO:0030246
Stsc60423g00009 1067 SUPERFAMILY Starch-binding domain-like 757 856 IPR013784 GO:0030246
Stsc60423g00009 1067 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 473 1061 - -
Stsc60423g00009 1067 Gene3D - 867 1058 - -
Stsc60423g00009 1067 Gene3D - 284 477 - -
Stsc60423g00009 1067 FunFam Rhamnogalacturonate lyase B 175 274 - -
Stsc60423g00009 1067 Pfam Polysaccharide lyase family 4, domain III 869 1057 IPR029411 -
Stsc60423g00009 1067 Pfam Polysaccharide lyase family 4, domain III 287 473 IPR029411 -
Stsc60423g00009 1067 SUPERFAMILY Galactose-binding domain-like 866 1058 IPR008979 -
Stsc60423g00009 1067 Pfam Polysaccharide lyase family 4, domain II 783 855 IPR029413 -
Stsc60423g00009 1067 Pfam Polysaccharide lyase family 4, domain II 202 273 IPR029413 -
Stsc60423g00009 1067 CDD RGL4_M 760 859 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60423g00009 Stsc-Chr60423 44560 58434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60423g00009 1 473 Polysaccharide Lyase AT1G09890 64.135 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60423g00009 K18195 - gmx:100815677 904.434