Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00042 ATGTCTCTCTCACAAACCCTACTTCCCCTCCTCCTTACCCTCATCATCACCCTCGTTACCGCCGATGACTCCGCCGTCATGTCCAATTTCCTCAAAACCCTCACATCGCCGCCCTCCGACTGGTCCTCCAAAACCTCTTACTGCCAATGGACCGGCATCACCTGCGACTCCTCCAACCGCGTAACCGCCATTAAACTCTCCTCAAAGTCCCTCACCGGCACACTCCCCTCCGATCTCAACTCCCTCTCTCAGCTCACTGACCTCTACCTCCAACAAAACTCCCTCTCCGGTCCGCTCCCTTCCCTCTCCAACCTCTCCAACCTCCAAACCGCCTACCTCGACACCAACAACTTCACCTCCGTCCCCTCCGCCGCATTCTCCGGCCTCACCAGCCTCCAGAAACTTAGCCTCTTCAACAACCCTTCCCTCTCCCCGTGGCCCTTCCCCACCGACTTAACCAACTCATCAACCCTCAGCGATCTCGATTTCGGTTCCGCCGGAATCACCGGCGACCTTCCGGACATCTTCGACTCCTTCCCCGGTCTCCAGAACCTTCGCCTCTCCTACAACAACCTCACCGGATCCTTGCCCACTTCCCTCGCCTCCTCTTCCATTACCAACCTCNNNNNNNNNNACGGTTTATCGGGGACAATTGAAGTTCTCTCCAACATGACGCAGTTGTCTCAGTTGTGGCTTCACAAGAACCAGTTCACCGGTGGGATCCCCGATTTGTCGAAATGTGATAGCCTCTTTGATTTGCAACTAAGGGATAACAAGCTTACCGGGGTCGTTCCGAACTCATTGATGGCGCTTTCAAGCTTGAAGAACGTATCTTTGGACAACAATGAGTTGCAGGGTCCTGTGCCGGTGTTCCTTAAGGGTGTGCAGGTTACTCTTGATGGGATCAATAGTTTTTGTAGGGATACTCCTGGACCTTGTGATAATAGGGTCATGGTTTTGCTTAAGGTTGCTGAGGGTTTCGGGTACCCGAGTCGGTTTGCGGAATCGTGGAAGGGGAATGATCCTTGCAATAGTTGGAGTTTTGTGGTTTGTTCAGATGGGAAGATTACTACTTTGAATTTTAAGAATCTGGGTTTGCAGGGGATTATTTCACCTGCATTTGCGAATTTGACTGATTTGAAGAGCTTGTACCTCAGTGGGAACAATTTGACTGGTTCTATACCGGAGAGCTTGACCACATTGCCCCAACTCGAGACTCTTGATGTGTCGAATAACAATTTGTTTGGAGATGTTCCGAAATTCCCTCCAAGGGTGAAGTTATTTACTTCTGGCAATGCTATGCTTGGGAAGAATCCTGGTCCTGGGGGAGGTGGAGGAGGGAGCGGAGCTAGTCCTTCTGTGGGGTCTGGTCCGAGTGGAAGTCCAGTTGAACAGAGGAAAGGTAGTTCCTTGCCGCCGGGTTGGATTGCTGGTATAGTGGTTTCTGTTTTACTTTTTGTTTTTGTGGTGGTGTTTGTATCCTGGAAGTGTTATGTCAGAAATCGGCACCGGAAGTTTGGAAGGGTTGGTGTTCCTGAGAATGGAAAAGGAAACTTTAAACTTGATGCGGCTAGCGTTTCCAATTCCAATGGATATGGTGGTGTGCCTAGTGAATTGCAAAGCCAGAGCAGTGGTGATAGGAGTGATCTTAATGGTTTTGATGGTGGAAGTGCCACAATTTCAATCCATGTTCTTCGTCAAGTAACCAATAATTTTAGTGAAGAGAACATTTTAGGTAGAGGAGGATTTGGTGTTGTTTATAAAGGCGAGTTGCCTGATGGAACAAAAATTGCCGTCAAGAGGATGGAATCTGTGGCAATGGGAAACAAAGGAATGAATGAGTTCCAAGCTGAGATAGCAGTTCTTAGTAAAGTTAGGCATAGACATCTTGTCGCTCTTTTGGGATATTGCATCAATGGCAATGAGAGGATTTTGGTATATGAGTATATGCCTCAAGGAACACTAACTCAGCATCTCTTTGAATGGCGTGAACTTGGATGTGCTCCCTTGACATGGAAACAAAGGGTAGCAATAGCTTTGGATGTAGCACGGGGAGTAGAGTACTTGCATAGCTTAGCTCAGCAAAGCTTCATTCACAGAGATTTAAAACCCTCAAACATACTATTAGGTGATGACATGAGGGCAAAGGTTGCAGATTTTGGGTTGGTTCGGCTTGCACCAGATGGGAAGTATTCTGTTGAGACTCGGCTGGCTGGAACATTTGGCTATCTTGCTCCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTTATCACCGGTAGAAGGGCATTGGATGATACTTTGCCCGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTTATTAACAAGGAAAACATCCCGAAGGCAATTGATCAAACTCTCGAACCAGATGAGGAAACCATGGAGAGCATATATAAAGTGGCCGAGCTGGCAGGCCATTGCACAGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTCTTGGTTCCACTCGTGGAGCAATGGAAACCAACAAGGAATCCAGAAGACGACAATGGTGGCATTGACCTTCAGATTAGTCTTCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCAACGTTTGATATGTCATACTCACAAACCCAATCAAGCATTCCCTCTAAACCCGCTGGCTTTGCAGATTCCTTCGATTCAATGGATTGCCGGTGA 2757 0.4784 MSLSQTLLPLLLTLIITLVTADDSAVMSNFLKTLTSPPSDWSSKTSYCQWTGITCDSSNRVTAIKLSSKSLTGTLPSDLNSLSQLTDLYLQQNSLSGPLPSLSNLSNLQTAYLDTNNFTSVPSAAFSGLTSLQKLSLFNNPSLSPWPFPTDLTNSSTLSDLDFGSAGITGDLPDIFDSFPGLQNLRLSYNNLTGSLPTSLASSSITNLXXXXGLSGTIEVLSNMTQLSQLWLHKNQFTGGIPDLSKCDSLFDLQLRDNKLTGVVPNSLMALSSLKNVSLDNNELQGPVPVFLKGVQVTLDGINSFCRDTPGPCDNRVMVLLKVAEGFGYPSRFAESWKGNDPCNSWSFVVCSDGKITTLNFKNLGLQGIISPAFANLTDLKSLYLSGNNLTGSIPESLTTLPQLETLDVSNNNLFGDVPKFPPRVKLFTSGNAMLGKNPGPGGGGGGSGASPSVGSGPSGSPVEQRKGSSLPPGWIAGIVVSVLLFVFVVVFVSWKCYVRNRHRKFGRVGVPENGKGNFKLDAASVSNSNGYGGVPSELQSQSSGDRSDLNGFDGGSATISIHVLRQVTNNFSEENILGRGGFGVVYKGELPDGTKIAVKRMESVAMGNKGMNEFQAEIAVLSKVRHRHLVALLGYCINGNERILVYEYMPQGTLTQHLFEWRELGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTLPDERSHLVTWFRRVLINKENIPKAIDQTLEPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTRNPEDDNGGIDLQISLPQALQRWQANEGTSTFDMSYSQTQSSIPSKPAGFADSFDSMDCR 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00042 918 Gene3D Ribonuclease Inhibitor 21 311 IPR032675 -
Stsc60422g00042 918 MobiDBLite consensus disorder prediction 889 905 - -
Stsc60422g00042 918 Pfam Leucine rich repeat N-terminal domain 319 352 IPR013210 -
Stsc60422g00042 918 Pfam Leucine rich repeat N-terminal domain 22 56 IPR013210 -
Stsc60422g00042 918 ProSiteProfiles Leucine-rich repeat profile. 379 402 IPR001611 GO:0005515
Stsc60422g00042 918 Pfam Protein tyrosine and serine/threonine kinase 575 846 IPR001245 GO:0004672|GO:0006468
Stsc60422g00042 918 SMART serkin_6 572 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60422g00042 918 CDD STKc_IRAK 578 851 - -
Stsc60422g00042 918 SUPERFAMILY Protein kinase-like (PK-like) 555 848 IPR011009 -
Stsc60422g00042 918 Gene3D Ribonuclease Inhibitor 315 438 IPR032675 -
Stsc60422g00042 918 Gene3D Transferase(Phosphotransferase) domain 1 650 869 - -
Stsc60422g00042 918 FunFam Receptor-like kinase TMK4 21 311 - -
Stsc60422g00042 918 SMART LRR_typ_2 377 401 IPR003591 -
Stsc60422g00042 918 SMART LRR_typ_2 105 128 IPR003591 -
Stsc60422g00042 918 SMART LRR_typ_2 179 202 IPR003591 -
Stsc60422g00042 918 MobiDBLite consensus disorder prediction 530 552 - -
Stsc60422g00042 918 MobiDBLite consensus disorder prediction 452 466 - -
Stsc60422g00042 918 PANTHER OSJNBA0070M12.3 PROTEIN 9 918 - -
Stsc60422g00042 918 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Stsc60422g00042 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Stsc60422g00042 918 ProSitePatterns Protein kinases ATP-binding region signature. 578 600 IPR017441 GO:0005524
Stsc60422g00042 918 MobiDBLite consensus disorder prediction 889 918 - -
Stsc60422g00042 918 MobiDBLite consensus disorder prediction 432 468 - -
Stsc60422g00042 918 FunFam receptor protein kinase TMK1 534 649 - -
Stsc60422g00042 918 MobiDBLite consensus disorder prediction 530 550 - -
Stsc60422g00042 918 FunFam Leucine-rich repeat receptor-like kinase 315 438 - -
Stsc60422g00042 918 SUPERFAMILY L domain-like 34 422 - -
Stsc60422g00042 918 SMART LRR_sd22_2 377 400 - -
Stsc60422g00042 918 SMART LRR_sd22_2 82 107 - -
Stsc60422g00042 918 FunFam receptor protein kinase TMK1 650 867 - -
Stsc60422g00042 918 ProSiteProfiles Protein kinase domain profile. 572 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60422g00042 918 Gene3D Phosphorylase Kinase; domain 1 537 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00042 Stsc-Chr60422 280541 284509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00042 61 848 Receptor kinase-like Gene Family AT5G07280 33.171 1.71e-94 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc60422g00042 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00042 K00924 - gmx:100286794 1325.46