Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00035 ATGGACGGAGGAGCGCCGCAATCCGCCGGAGGAGGACCGGCGCCGTTCTTGTTGAAGACCTATGACATGGTTGACGATTCCTCCACCGACGACATCGTTTCTTGGAACAGCTCCACCAACAGCAGCTTCGTTGTTTGGAACCCGCCGGAGTTCGCGCGCCTTCTTCTACCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATCCGCCAGCTTAACACCTATGGATTTCACAAAATACATCCTGAACGGTGGGAGTTTGCTAATGATGATTTTATCAAAGACCAAAAGCATCTTCTTAAGAATATCCACCGCAGGAAACCTATTCACAGTCATAGTCATCCTCCAGGCTCTGTTGTGGATCCAGAAAGGGCAGCATTTGAGGAAGAAATCGAAAAACTTAACCGTGAGAAATCTTCTATTGAGTCCAATATTTTAAACTTCAAGCAACATCAGTCAACAGCGAAGGTTCATCTAGAAGATTTTCAGCAGCGATTAGAAGGTATGGAGAAGAGGCAGAAACATTTGCTTCACATTTTCGAAAAGGCTCTTCAGAATCCTACTTTTGTTGAGCAGCTTTCCCGGAAAATCGAGTCCATGGATTTATCAGCATATAACAAGAAAAGACGATTGCCTCAAGTTGATGATGTGCAGCCTGTTGTAGAAAGTAGTTTTGTGGACAATCCTAACAATTTTAGAATGGAATTTGGAAACGTTTTCCATCAAGATTTCTCGAACAAACTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTGTCACGCAGCACACAAAGTTCAAATGAAGATGAGGAAAGTCCACAGAAGAAAATATCTGAAGAAGAACCAACAGGAATGCAGACAAGAATTCCATTTGCACCAGAAACATTGGAGCTTGCGGATACTGGAGCATCTTTTACTTTCAAGATGGATTCATGTTTATCACAAAGAGCGACAAACACTGAGAGCCCGAAACTGCCCTCATTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTTACTCTGGCATCGTGCCCATTGAAGGTCAACAGAAATTCATCCTCAACAAGACCACTCCAAACTCAAATAGACTGTCAAGAAGTCGGCAAGTTGACAGAGCCTAGATTTCATTCCAACAGTAAAGAATCCGACAGTGGAGTTTTCTCAAACCGAAACCAAGCTAATGATGCGACCAATTTGGCTTCTTCGCTGGAAACTCCAAGTAACAAACAAGTTACTCAGCCAACTAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACGGAAAGACCAGGCTGTACAGACAATGAAGAGGCAATATCCAACTACAGAGCAAACCCATGCGATGAGCAAGATGAAGGGCGGTTGAATGCAAGGAATGTTAAGAACATGGATCAGCTTACACTTTAA 1428 0.4307 MDGGAPQSAGGGPAPFLLKTYDMVDDSSTDDIVSWNSSTNSSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLNREKSSIESNILNFKQHQSTAKVHLEDFQQRLEGMEKRQKHLLHIFEKALQNPTFVEQLSRKIESMDLSAYNKKRRLPQVDDVQPVVESSFVDNPNNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDEESPQKKISEEEPTGMQTRIPFAPETLELADTGASFTFKMDSCLSQRATNTESPKLPSLEPSSEEGDSHISCQLTLASCPLKVNRNSSSTRPLQTQIDCQEVGKLTEPRFHSNSKESDSGVFSNRNQANDATNLASSLETPSNKQVTQPTRVNDVFWEQFLTERPGCTDNEEAISNYRANPCDEQDEGRLNARNVKNMDQLTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00035 475 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60422g00035 475 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60422g00035 475 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60422g00035 475 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60422g00035 475 Coils Coil 124 151 - -
Stsc60422g00035 475 Pfam HSF-type DNA-binding 16 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60422g00035 475 MobiDBLite consensus disorder prediction 450 475 - -
Stsc60422g00035 475 MobiDBLite consensus disorder prediction 320 341 - -
Stsc60422g00035 475 SMART hsfneu3 12 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60422g00035 475 MobiDBLite consensus disorder prediction 260 291 - -
Stsc60422g00035 475 FunFam Heat shock transcription factor 1 9 107 - -
Stsc60422g00035 475 MobiDBLite consensus disorder prediction 377 398 - -
Stsc60422g00035 475 SUPERFAMILY "Winged helix" DNA-binding domain 12 106 IPR036390 -
Stsc60422g00035 475 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 329 IPR027725 -
Stsc60422g00035 475 Gene3D - 11 107 IPR036388 -
Stsc60422g00035 475 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00035 Stsc-Chr60422 250537 253624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00035 16 475 HSF AT4G13980 54.025 1.05e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc60422g00035 HSF_DNA-bind 2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00035 K09419 - gmx:100786408 748.814