Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00028 ATGCGCTGCTATTCCGGTTTAACCATCCCACCCACCGATCACCGCTTCTGCGTCCCCACCGCACCGAATCCCCTCTCTCTGAGGCCAATTATTCGCCCAAACCGAGTTACTCTCTCCTTCAAGAGCCCCAGGGCCACCCTCAACGCCGTCGCCGAGGAGGAGGCAGCACCGCCGCTTTCGGAGCTGACCTTCTACGAGCTTCTAGGGATTTCGGAATCGGGGTCGCTCATGGAGATAAAGCAAGCGTACAAGCAACTTGCAAGAAAGTACCATCCCGATGTGTCTCCGCCGGGTCGGGTCGAAGAGTACACGAAGCGGTTCATTCGGGTCCAAGAGGCTTACGAGACACTATCGGATCCCACTCGGAGAGCTATGTATGATAGCGACATGGCTAGGGGAGTTCACTTCGCCTTCAATGCTCGTAGAAGTTACCACCACCGCGATCAGGTTGAACATAAGAGGGAGTGGAAATCTCGTTGGCAATCACAACTTTCTGAGCTGAAAAGAAGAAGTAGGAGCAAGAGCATGAGCAAGGATGAAGGAGGGAACATGTCGTGGGCAGCTAGAATGCGCCAGAAAAGAAATGAAGCATCAGATGAATCATGA 606 0.5347 MRCYSGLTIPPTDHRFCVPTAPNPLSLRPIIRPNRVTLSFKSPRATLNAVAEEEAAPPLSELTFYELLGISESGSLMEIKQAYKQLARKYHPDVSPPGRVEEYTKRFIRVQEAYETLSDPTRRAMYDSDMARGVHFAFNARRSYHHRDQVEHKREWKSRWQSQLSELKRRSRSKSMSKDEGGNMSWAARMRQKRNEASDES 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00028 201 PRINTS DnaJ domain signature 65 83 IPR001623 -
Stsc60422g00028 201 PRINTS DnaJ domain signature 102 122 IPR001623 -
Stsc60422g00028 201 PRINTS DnaJ domain signature 83 98 IPR001623 -
Stsc60422g00028 201 MobiDBLite consensus disorder prediction 166 201 - -
Stsc60422g00028 201 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 44 198 - -
Stsc60422g00028 201 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Stsc60422g00028 201 SMART dnaj_3 62 122 IPR001623 -
Stsc60422g00028 201 Pfam DnaJ domain 63 127 IPR001623 -
Stsc60422g00028 201 CDD DnaJ 63 119 IPR001623 -
Stsc60422g00028 201 FunFam Chaperone protein dnaJ 20, chloroplastic 49 158 - -
Stsc60422g00028 201 SUPERFAMILY Chaperone J-domain 61 136 IPR036869 -
Stsc60422g00028 201 Gene3D DnaJ domain 55 168 IPR036869 -
Stsc60422g00028 201 ProSiteProfiles dnaJ domain profile. 63 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00028 Stsc-Chr60422 183396 185421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00028 65 128 C2H2 Transcription Factor Family AT1G74250 47.761 5.13e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00028 - - adu:107482289 318.161