Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00022 ATGTCAACAAAAAGTTTGGATTCTTCTCCTTCTGAATCCTCTAGCATCTCTGGCACCTCCGAAGGGAATGATCATACACTTCTTAGTGTTGATAACAACAACAAAAGGGACAATGATCTAGCATCCGCACCGGATCAAGCCTCGAATTCCAATGATAATGATGGTAATTCGCAAACAATGTTGAATTTTGTGAAGCTCTCGAACAATGTTTCATCGATTCGTTGTTCTTCCAACGTGAAAGAGCTCGATTTTTTCAATGCCGGGAAAAAGGCGATGGGATCATCATCTTCTTGGGCTAATAACATTGACGAAGGAAGAGAAGAAAACACCGAAGAGAATACTTCTGAGACGAAAACTTTCTCTTGCAATTTCTGTAAGAGAGAGTTTTCGTCCTCACAAGCCCTTGGAGGGCACCAGAATGCCCACAAACAAGAGCGTGCGATAGCGAAACGTCGGCAAGGGATGGACACGAACGCTCTTGGTCACCTTCATCACTTTCCATATTATCCTTACTCTAGCTTTCCCACAAACCCTTATTATGGGTCCTACAATAGGGCACTTGGGGTAAGAATGGAGTCCATGATTCACAAACCTTCTTATCCTTGGTCTGCTGGCCATCATAGATTTGGTCGAAGTCATAATTGGTCAACGCAAGGGATTCTAAGTTCATCATCATCATTAGCACTTGATAAACTAATTATTGAAGGTTTGCAACCAAATAATAATGAAGGTGCCCAAGGTGGGGTTAGTGGAATTCAAGCAAGTTCTTCAAATTTGAAGATAGAAGATGATAATGGTGGTAATAATAATGGAACTACTCCCGAATTAGGAGATTCTTCTACTAAAGATGTTGCTACAAATCTCACTCACCATGGCACGGATGATCATGATCCCAAGCCATATAATAAACCATCTAGTTCTGAGTCTCCAGAGCTTGATTTGTCACTTAAGCTTTAA 957 0.4117 MSTKSLDSSPSESSSISGTSEGNDHTLLSVDNNNKRDNDLASAPDQASNSNDNDGNSQTMLNFVKLSNNVSSIRCSSNVKELDFFNAGKKAMGSSSSWANNIDEGREENTEENTSETKTFSCNFCKREFSSSQALGGHQNAHKQERAIAKRRQGMDTNALGHLHHFPYYPYSSFPTNPYYGSYNRALGVRMESMIHKPSYPWSAGHHRFGRSHNWSTQGILSSSSSLALDKLIIEGLQPNNNEGAQGGVSGIQASSSNLKIEDDNGGNNNGTTPELGDSSTKDVATNLTHHGTDDHDPKPYNKPSSSESPELDLSLKL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00022 318 MobiDBLite consensus disorder prediction 95 115 - -
Stsc60422g00022 318 MobiDBLite consensus disorder prediction 288 302 - -
Stsc60422g00022 318 MobiDBLite consensus disorder prediction 258 287 - -
Stsc60422g00022 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Stsc60422g00022 318 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Stsc60422g00022 318 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 318 IPR044246 GO:0009788
Stsc60422g00022 318 SUPERFAMILY beta-beta-alpha zinc fingers 117 147 IPR036236 -
Stsc60422g00022 318 MobiDBLite consensus disorder prediction 258 318 - -
Stsc60422g00022 318 Gene3D Classic Zinc Finger 100 163 - -
Stsc60422g00022 318 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00022 Stsc-Chr60422 151120 152076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00022 114 199 C2H2 Transcription Factor Family AT5G10970 54.545 9.39e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60422g00022 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00022 - - ahf:112735686 322.398