Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00013 ATGGAAAGAGAAAGAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGCTAGCATTGCGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAGAAGTTAGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTTGGATTGCCTCCGGAAGAACCTGCAGAAGCCAAACCCTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCCACCAAAGCTGAACAAATGAGAGAGTGCCTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAAAGCATTCCAAACCCTCCTCACTTATGTGGGAAATGTTGCCAGAAATCCTGATGAGGAAAAATTCAGGAAAATCCGACTCAGTAACCAAACTTTTCAGGACCGAGTTGGTGCGTTGAAGGGGGGAATTGAATTCCTGGAGATTTGTGGATTTGAGAAGATTGATGGTGAGGAGTTTTTGTTTTTGCCTAGGGACAAAGTTGAAATGGCAGTTCTGAATTCAGCTGGGTCTGAACTAGATTCAGCAATTAAGAATCCCTTCTTTGGAGTTCTTTAG 627 0.4386 MEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPAEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNQTFQDRVGALKGGIEFLEICGFEKIDGEEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00013 208 SMART PGNneu 118 181 - -
Stsc60422g00013 208 Gene3D - 99 198 - -
Stsc60422g00013 208 Coils Coil 14 59 - -
Stsc60422g00013 208 MobiDBLite consensus disorder prediction 34 83 - -
Stsc60422g00013 208 Pfam PUB domain 115 185 IPR018997 -
Stsc60422g00013 208 CDD PUB_UBA_plant 102 208 - -
Stsc60422g00013 208 SUPERFAMILY PUG domain-like 90 204 IPR036339 -
Stsc60422g00013 208 PANTHER F13M7.16 PROTEIN 1 208 - -
Stsc60422g00013 208 MobiDBLite consensus disorder prediction 34 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00013 Stsc-Chr60422 69824 71980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00013 12 208 C2H2 Transcription Factor Family AT1G04850 81.500 2.05e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00013 K24348 - gmx:100779218 332.413