Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00012 ATGGCGGGGGTTTCTCTCAAGTGTGGTGACTGTGGCACTCTCTTGAGGTCCGTAGAGGAAGCACAACAGCATGCCGAGCTCACCAACCACTCCAACTTCTCTGAATCCACCGAAGCAGTTCTCAACCTCGTTTGCACTTCTTGCGGCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCATACGAAAAGAACCGGGCATACTGAGTTTGTAGATAAGACTTCAGAGGCAGCAAAACCGATAAGTTTAGAAGCGCCAAAGGTAGATGAAACTGCTGCATCAGAAGAGGCTCCCAATGCAGATGCAAGCCAAGATGAAGAAATGGTTGTTCCTGAGGTTGACAAAAAGCTTGTTGAGGAACTCGAAGCAATGGGATTTTCTACAGCTCGAGCAACGCGTGCACTTCATTATTCTGGTAATGCTTCCATTGAGGCTGCCATTAATTGGATAGTAGAGCATGAGTCTGACCCTGACATAGACCAGATGCCCTTGGTACCTGCCAATACCAAAGCTGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTGAAAGCTAAACAACAGGAACTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAAAGGAGAATGGAAAGAGAAAGAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGCTAGCATTGCGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAGAAGTTAGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTTGGATTGCCTCCGGAAGAACCTGCAGAAGCCAAACCCTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCCACCAAAGCTGAACAAATGAGAGAGTGCCTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAAAGCATTCCAAACCCTCCTCACTTATGTGGGAAATGTTGCCAGAAATCCTGATGAGGAAAAATTCAGGAAAATCCGACTCAGTAACCAAACTTTTCAGGACCGAGTTGGTGCGTTGAAGGGGGGAATTGAATTCCTGGAGATTTGTGGATTTGAGAAGATTGATGGTGAGGAGTTTTTGTTTTTGCCTAGGGACAAAGTTGAAATGGCAGTTCTGAATTCAGCTGGGTCTGAACTAGATTCAGCAATTAAGAATCCCTTCTTTGGAGTTCTTTAG 1239 0.4576 MAGVSLKCGDCGTLLRSVEEAQQHAELTNHSNFSESTEAVLNLVCTSCGKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEAPKVDETAASEEAPNADASQDEEMVVPEVDKKLVEELEAMGFSTARATRALHYSGNASIEAAINWIVEHESDPDIDQMPLVPANTKAEAPKPSLTPEELKAKQQELRERARKKKEEEERRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPAEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNQTFQDRVGALKGGIEFLEICGFEKIDGEEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00012 412 MobiDBLite consensus disorder prediction 255 284 - -
Stsc60422g00012 412 MobiDBLite consensus disorder prediction 170 211 - -
Stsc60422g00012 412 Gene3D - 114 160 - -
Stsc60422g00012 412 MobiDBLite consensus disorder prediction 74 108 - -
Stsc60422g00012 412 Pfam UBA/TS-N domain 117 150 IPR015940 -
Stsc60422g00012 412 SMART uba_6 114 152 IPR015940 -
Stsc60422g00012 412 CDD UBA_PUB_plant 112 160 - -
Stsc60422g00012 412 MobiDBLite consensus disorder prediction 255 287 - -
Stsc60422g00012 412 SUPERFAMILY PUG domain-like 294 408 IPR036339 -
Stsc60422g00012 412 Gene3D - 300 402 - -
Stsc60422g00012 412 SUPERFAMILY UBA-like 96 166 IPR009060 GO:0005515
Stsc60422g00012 412 CDD PUB_UBA_plant 306 412 - -
Stsc60422g00012 412 Coils Coil 183 215 - -
Stsc60422g00012 412 Pfam PUB domain 319 389 IPR018997 -
Stsc60422g00012 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Stsc60422g00012 412 SMART PGNneu 322 385 - -
Stsc60422g00012 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Stsc60422g00012 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 112 153 IPR015940 -
Stsc60422g00012 412 MobiDBLite consensus disorder prediction 177 211 - -
Stsc60422g00012 412 Coils Coil 218 263 - -
Stsc60422g00012 412 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00012 Stsc-Chr60422 69824 74145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00012 99 412 C2H2 Transcription Factor Family AT1G04850 78.370 2.02e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00012 K24348 - gmx:100794687 648.277