Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60422g00006 ATGGATTCGGTGCCTTCGAATTCACATGGAAATCTCGATGAGCAGATTGCTCAGCTCATGCAGTGCAAGCCCTTGTCCGAACAAGAGGTAAGGGTCTTGTGTGAGAAGGCAAAGGAGATTTTGATGGAAGAGAGCAATGTTCAGCCTGTGAATAGTCCTGTTACAATTTGTGGTGATATTCATGGGCAATTCCATGACCTTGCAGAGCTTTTTCGCATTGGGGGGAAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGACCGTGGCTACTACTCTGTTGAAACTGTAACGCTTTTGGTTGCCCTTAAAGTTCGCTATCGTCAGCGTATCACCATTCTGAGGGGAAATCACGAAAGTCGTCAGATTACACAAGTTTATGGGTTTTATGACGAGTGTCTACGGAAGTATGGTAGTGCTAATGTTTGGAAGACCTTCACTGATTTGTTCGACTACTTTCCGTTGACAGCATTGGTTAATGATCGCTGTGGTTGGGGTATCTCTCCTAGAGGTGCTGGATATACCTTCGGTCAGGACATATCTGAGCAATTTAACCATACCAATAACTTGAAGCTGATTGCTAGAGCTCACCAGCTGGTCATGGAAGGGTATACCTGGGGCCATGAGCAAAAGGTGGTTACCATATTTAGTGCACCTAATTATTGTTATCGCTGTGGGAACATGGCATCCATCCTTGAAGTTGATGACTGCAAGGGACACACTTTCATTCAGTTCGAACCAGCTCCAAGGAGGGGAGAGCCGGATGTAACCAGGAGAACACCTGATTACTTCCTATGA 804 0.4502 MDSVPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMEESNVQPVNSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKTFTDLFDYFPLTALVNDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYTWGHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60422g00006 267 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 10 164 IPR047129 GO:0004722
Stsc60422g00006 267 SMART pp2a_7 25 251 IPR006186 GO:0016787
Stsc60422g00006 267 Pfam Calcineurin-like phosphoesterase 53 163 IPR004843 GO:0016787
Stsc60422g00006 267 Gene3D - 5 163 IPR029052 -
Stsc60422g00006 267 Gene3D - 164 267 IPR029052 -
Stsc60422g00006 267 PRINTS Serine/threonine phosphatase family signature 213 229 IPR006186 GO:0016787
Stsc60422g00006 267 PRINTS Serine/threonine phosphatase family signature 53 80 IPR006186 GO:0016787
Stsc60422g00006 267 PRINTS Serine/threonine phosphatase family signature 115 139 IPR006186 GO:0016787
Stsc60422g00006 267 PRINTS Serine/threonine phosphatase family signature 82 109 IPR006186 GO:0016787
Stsc60422g00006 267 CDD MPP_PP2A_PP4_PP6 11 251 - -
Stsc60422g00006 267 ProSitePatterns Serine/threonine specific protein phosphatases signature. 116 121 IPR006186 GO:0016787
Stsc60422g00006 267 SUPERFAMILY Metallo-dependent phosphatases 10 252 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60422g00006 Stsc-Chr60422 32768 38548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60422g00006 17 164 Calmodulin-binding Proteins AT5G63870 38.462 1.26e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60422g00006 K04382 - gmx:100782279 529.25