Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00059 ATGATGGGTGCGCCTGGGGTTCTTATTCCTGCTGAGGTGCCAAGCAGTCGGCTCCAAAACAATAGCTTTTCTGTAAGGAGTTGTGAAGAAGTTGTGGGAGCAGGACAATCTAACAGAACACATTTGATGCTTAATGATAGAACTCGAGCGTTGGGTAGCTCACCTGATCAGTCCAGCAAAATATCAAAAGCAGTCAGGTCCCAGTCAGAAGAACCCTTAATTGTGGGTGGTCAAACAAAACCAGTTGATAATATCCATGTTGGAATGAGTGAAACAGAGAGGTTTGGACATAATTTGGGAAATCTACTAAGGTCACTGCATAAATCATGTGAATTCTCGTCACATACAGAAACATCACCAGCGGAAAAGATTCGTGTAAACAACGTATCCAAGTATGTCCTCAGTGCAGCAAAGATCCCAGAATTTGCACAAAAACTACACACAGTTTTGCTAGAGAGTGGAGCCCTTCCCCCACATGATCTCTTTTCTGGTGTTTATCCAGAAAATTTGGGAGAAGATAAACCATGTGAAGAATTTGTCAGGGATATTGTTCAAGATGATCCAAATAGGTTGTCATTAAGCTACAACAAATCTCTCATACCCTGTCAAATGAAGCACTCTGCCCATGATACTAGGTCAGAACAGCAGAAAGAATTTTACATAGATAGATATGATAATTCCACACAGTGTGATTGTGAATGTGATACTACGAGTAAGGGGTCTGTGATGGTTTGTGACAATAGAGTTGATGAGTTTGGGCAATCTGATAACTTATGTAAAGAACAAAGTCCCCAGTCTGACTTGCCCAAGACAGCTGTTTCTTGTGAAACACGTGATAGGTTTGACTTTTCCCATGATGAGGATGAAAGCGACAGAGTTAACCCAGTCTTGAGGGAGAAAAAAGAATGGGAAATTCAATGGGAGGATCTTTGTATTGGTAGACGTATTGGTATAGGTTCTTATGGTGAGGTTTTCCATGCTGTTTGCAACGGTTCGGAAGTTGCTGTGAAGAAGTTTCTAACACAAGATTTATCCAGTGATGCAGTGGCTCAATTTAAATCTGAAGTTGAGATCATGTTAAGGCTGCGGCATCCCAATATTGTGCTCTTCATGGGAGCTATTACTCGCCCACCACATCTATCCATCTTGACAGAGTTTCTTCCAAGAGGAAATTTATATGGTCTATTGCGTAATCCTAAGTTTCAATTTAATGACAAGAGGCGGTTGCGTATGGCTGTTGATGTGGCTAAGGGAATGAACTACTTACACACAAGTCATCCTCCCATAGTCCATCGAGATTTGAAGTCTCCAAATCTTCTTGTCTCCAAGCATTGGGTTCTTAAGGTCTGTGATTTTGGTCTATCGCGGATGAAGCACCATACTTTTTTGTCATCAAATTCTTATGCTGGAACGGCCGAGTGGATGGCACCAGAAGTCTTAAGAAACGAGCTTGCCAATGAAAAGTGTGATGTATATAGTTTCGGAGTAATCTTATGGGAGTTGGCTAGCACAATGATCCCGTGGCAAGGTTTGAACCAAATGCAGGTCGTTGGAGCTGTTGGATTCCAAAACAGGCGCCTTGAAATTCCAGATGATGTTGATCCAGAAGTAGCACAGATAATACGTGATTGTTGGCAAATGGATCCACAGTTACGGCCATCATTCTCAGAGTTGTTGCCTCGTCTCTGCCAACTTCAACATCTTCTTGTTGTTAAAGGTGTAAAACGAGCTCCACACATCAAATGA 1746 0.4198 MMGAPGVLIPAEVPSSRLQNNSFSVRSCEEVVGAGQSNRTHLMLNDRTRALGSSPDQSSKISKAVRSQSEEPLIVGGQTKPVDNIHVGMSETERFGHNLGNLLRSLHKSCEFSSHTETSPAEKIRVNNVSKYVLSAAKIPEFAQKLHTVLLESGALPPHDLFSGVYPENLGEDKPCEEFVRDIVQDDPNRLSLSYNKSLIPCQMKHSAHDTRSEQQKEFYIDRYDNSTQCDCECDTTSKGSVMVCDNRVDEFGQSDNLCKEQSPQSDLPKTAVSCETRDRFDFSHDEDESDRVNPVLREKKEWEIQWEDLCIGRRIGIGSYGEVFHAVCNGSEVAVKKFLTQDLSSDAVAQFKSEVEIMLRLRHPNIVLFMGAITRPPHLSILTEFLPRGNLYGLLRNPKFQFNDKRRLRMAVDVAKGMNYLHTSHPPIVHRDLKSPNLLVSKHWVLKVCDFGLSRMKHHTFLSSNSYAGTAEWMAPEVLRNELANEKCDVYSFGVILWELASTMIPWQGLNQMQVVGAVGFQNRRLEIPDDVDPEVAQIIRDCWQMDPQLRPSFSELLPRLCQLQHLLVVKGVKRAPHIK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00059 581 Pfam Protein tyrosine and serine/threonine kinase 312 561 IPR001245 GO:0004672|GO:0006468
Stsc60421g00059 581 ProSiteProfiles Protein kinase domain profile. 310 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60421g00059 581 MobiDBLite consensus disorder prediction 50 66 - -
Stsc60421g00059 581 MobiDBLite consensus disorder prediction 49 71 - -
Stsc60421g00059 581 SUPERFAMILY Protein kinase-like (PK-like) 294 560 IPR011009 -
Stsc60421g00059 581 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 115 563 - -
Stsc60421g00059 581 FunFam Serine/threonine-protein kinase isoform 1 300 388 - -
Stsc60421g00059 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Stsc60421g00059 581 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Stsc60421g00059 581 Gene3D Phosphorylase Kinase; domain 1 303 387 - -
Stsc60421g00059 581 SMART serkin_6 310 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60421g00059 581 PRINTS Tyrosine kinase catalytic domain signature 384 397 IPR001245 GO:0004672|GO:0006468
Stsc60421g00059 581 PRINTS Tyrosine kinase catalytic domain signature 423 441 IPR001245 GO:0004672|GO:0006468
Stsc60421g00059 581 PRINTS Tyrosine kinase catalytic domain signature 470 480 IPR001245 GO:0004672|GO:0006468
Stsc60421g00059 581 PRINTS Tyrosine kinase catalytic domain signature 533 555 IPR001245 GO:0004672|GO:0006468
Stsc60421g00059 581 PRINTS Tyrosine kinase catalytic domain signature 489 511 IPR001245 GO:0004672|GO:0006468
Stsc60421g00059 581 CDD STKc_MAP3K-like 316 562 - -
Stsc60421g00059 581 FunFam PAS domain-containing protein tyrosine kinase family protein 388 577 - -
Stsc60421g00059 581 Gene3D Transferase(Phosphotransferase) domain 1 389 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00059 Stsc-Chr60421 317581 321397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00059 1 568 MAP Kinase Kinase Kinase AT5G11850 53.833 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc60421g00059 PK_Tyr_Ser-Thr 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00059 K04424 - gmx:100779137 664.84