Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00058 ATGGCAAGGAAATGCACGTATTGTGGGAATTGTGGTCACAATTCAAGGACTTGCAACCACAGTTTCAGTAGTACCACAGGGGGAAGGAGTGGACTAAAGCTCTTTGGGGTTCAACTTGATGATAATCAATATTCTTCTTCTTCTTCATGTTTTGACATGATGATGAGAACAAGTTTTAGCATGGACTACCTGCTATCCTTATCTACATCTTCTTCCTCTTCATCAATATCGTCGCTTGTTGGTGCAAATGAAAACACACATGAAATATCTTATTCTTGCTTAACCGCCGCCGGTAGCAGCAGTAGCGGGCTTATGTCAACTATCAAAGAGAATAATAACAAAGGTTTGGCATGGAGTGAGGAGGAACACCGTGTATTCCTAGAGGGGCTAGAGAAGCTGGGGAAGGGTAACTGGAGAGACATATCCAAATGCTTTGTGAGAACAAGAACGCCCACTCAAGTAGCCAGCCATGCACAGAAGTATTTTCTCCGTCACATTCGGCCGAGAAAGAAGCACCTCACCCTAGCAAAAGACGATGTGGAAACTAGAAGTAGCCATGATTCCATTGTTCTATCTCAGTTGCTTGCCTCTGCAACTTCATCAACAAACTGCACCTCTTCTGCTGCTCCTGATTTAGAATTGAAACTTGCAACTCCATCTCCTTAA 666 0.4354 MARKCTYCGNCGHNSRTCNHSFSSTTGGRSGLKLFGVQLDDNQYSSSSSCFDMMMRTSFSMDYLLSLSTSSSSSSISSLVGANENTHEISYSCLTAAGSSSSGLMSTIKENNNKGLAWSEEEHRVFLEGLEKLGKGNWRDISKCFVRTRTPTQVASHAQKYFLRHIRPRKKHLTLAKDDVETRSSHDSIVLSQLLASATSSTNCTSSAAPDLELKLATPSP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00058 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 113 164 IPR006447 GO:0003677
Stsc60421g00058 221 CDD SANT 117 162 IPR001005 -
Stsc60421g00058 221 ProSiteProfiles Myb-like domain profile. 110 162 IPR001005 -
Stsc60421g00058 221 SMART sant 114 164 IPR001005 -
Stsc60421g00058 221 PANTHER TRANSCRIPTION FACTOR KUA1 3 183 - -
Stsc60421g00058 221 Gene3D - 118 167 - -
Stsc60421g00058 221 SUPERFAMILY Homeodomain-like 113 164 IPR009057 -
Stsc60421g00058 221 ProSiteProfiles SANT domain profile. 118 166 IPR017884 -
Stsc60421g00058 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 166 IPR017930 -
Stsc60421g00058 221 FunFam transcription factor MYB1R1 116 167 - -
Stsc60421g00058 221 Pfam Myb-like DNA-binding domain 117 162 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00058 Stsc-Chr60421 315270 316245 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc60421g00058 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00058 - - gmx:100806176 182.956