Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00047 ATGCTCCATAACCTTCGAATCCCTCGCTCCCATGGAGAACAAGGACCACCATTCTCTCCATTCTCCACCGATGCAGAAGATTATTCTGACACGCACTACCACCTCCACCTCTTCTCCACCGATCACTTTCGAATGTACGACTTCAAGGTTCGTAACTGTCCACGTGCCAGGTCGCACGACTGGACGGAGTGCCCCTACGCTCACCCTGCCGAGAAGGCTCGCCGGAGGGACCCTCGAAAGTTCCAATACTCCGGCACGGCGTGCCCGGAGTTTAGAAAAGGGCATTGCCGGAAAGGTGACTCATGCGAGTTCGCTCACGGCGTGTTCGAGTGCTGGCTCCACCCTCAAAGATACCGGACTCAGCTCTGCAAGGACGGCACAGGCTGCCGCCGCCGCGTCTGCTTCTTTGCACACGCGCCGGATCAGCTGCGCGTGCTGGCTCCCAACTCGGCCGAGTCGCAACTCAGCGACTCGCCGAGTCTTCGTGGAAATAAAAACAACAATGTTTCTTCGCCCACCTCGGTTCTTAACTACTCCAGTTATGTATCGGAATCGCCGCCATCTTCGCCTGTTGATCCTGGACACGGCGTCGTTCCGTTTAGTAGTACGGTGCGGAAGTTGGTGAGCTCAATGCGGAACGTGCAGCTTGAGGAAATGCGTTTTGGGCCTGAAATGGGCCGTGTATTTGGGTCTCGAAGTTTGGGCCTGGGCCCAATCAGTGGGTGGGAGGAGGAGGAGGAGCCTGCAATGGAGAGGGTGGAATCTGGGAGAGATATACGGGCGAGAATGTATGCGAAGCTGAGTAGGGAGAACTCATCGATTGGAAGAAGCGAGGGTCCTTTACCTGATATTGGATGGGTCTCTGAACTCCTCAAGTGA 879 0.5597 MLHNLRIPRSHGEQGPPFSPFSTDAEDYSDTHYHLHLFSTDHFRMYDFKVRNCPRARSHDWTECPYAHPAEKARRRDPRKFQYSGTACPEFRKGHCRKGDSCEFAHGVFECWLHPQRYRTQLCKDGTGCRRRVCFFAHAPDQLRVLAPNSAESQLSDSPSLRGNKNNNVSSPTSVLNYSSYVSESPPSSPVDPGHGVVPFSSTVRKLVSSMRNVQLEEMRFGPEMGRVFGSRSLGLGPISGWEEEEEPAMERVESGRDIRARMYAKLSRENSSIGRSEGPLPDIGWVSELLK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00047 292 MobiDBLite consensus disorder prediction 1 21 - -
Stsc60421g00047 292 MobiDBLite consensus disorder prediction 150 169 - -
Stsc60421g00047 292 FunFam Zinc finger CCCH domain-containing protein 66 40 108 - -
Stsc60421g00047 292 Gene3D - 82 145 - -
Stsc60421g00047 292 PANTHER UNKEMPT FAMILY MEMBER 35 292 IPR045234 -
Stsc60421g00047 292 MobiDBLite consensus disorder prediction 268 292 - -
Stsc60421g00047 292 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Stsc60421g00047 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 107 IPR000571 GO:0046872
Stsc60421g00047 292 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Stsc60421g00047 292 SMART c3hfinal6 117 140 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00047 Stsc-Chr60421 264447 265746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00047 37 220 C2H2 Transcription Factor Family AT5G12850 51.515 1.21e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60421g00047 zf-CCCH 1.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00047 - K23048 adu:107461217 497.664