Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00043 ATGGAGGAATACACTAATAATAGCAACAATAATAATCAAAGGCCAAGTTCAAGTTCAAGGGCAACTTTCTTGTACTCTTCGCTTCCTGCTTCTTCAACCCTACCTCATCATCTTCCAATTAACACCTTTCATCTTCTTCATCATCATCATCAATCTACTGCAGATGCTGCTCCTTCTGGATCCGATCACTGCTTTCAATCCCATCATCAAGTATTACCTTCCGTCAAAACCGAACCCAACAACAACTCCTCCTCGCAGCAGCACCTTCACACTACTCATCATCAGATTTTCAACTATCCTCTCATGAGTCCAAGCAATCTTCATCAAAACTCCAACGATGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCCCATCCTCACTACTCTAATCTCTTACAAGCTTACATAGACTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGATTAAGCGCGGCTCGGCAGGAATTCGAGTCACGGCAGCGGTCTTTGGTTGGTTCCACCTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTAGTGAAGTACAGGGAGGAAGTTTCAAGGCCTATACAAGAGGCCATGGAGTTCATGCGCAGGATTGAGTCTCAGCTTAACATGCTTTCCAATAACGGACCCCTTCGCATCTTCTCTGAGGATAAATGTGAAGGAGTTGGTTCATCAGAAGAGGATGAACAAGAAAACAGCGGCGGCGACGAAGAATCAGGAGTAGTGGGGGAGATTGATCCTCGAGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGTGGATACTTAAGCAGCCTGAAGCAAGAACTGTCCAAGAAGAAGAAGAAAGGAAAACTCCCCAAAGATGCTAGGCAGAAGCTACTCACCTGGTGGGAGTTACATTACAAATGGCCTTATCCTTCTGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGACTTGATCAGAAGCAAATAAACAACTGGTTCATAAATCAGAGGAAGAGACACTGGAAGCCATCCGAAGACATGCAATTCATGGTCATGGATGGCATCCATCATCCACATCCACATCATAATAATCATCATCAAAACTCATCATCTCTCTACATGGATTCACATGGCCATTATATTATGCCTGATGGACAACATTACCGCTTACCACCATAA 1191 0.4484 MEEYTNNSNNNNQRPSSSSRATFLYSSLPASSTLPHHLPINTFHLLHHHHQSTADAAPSGSDHCFQSHHQVLPSVKTEPNNNSSSQQHLHTTHHQIFNYPLMSPSNLHQNSNDDDVEAIKAKIIAHPHYSNLLQAYIDCQKVGAPPEVVARLSAARQEFESRQRSLVGSTCGKDPELDQFMEAYYDMLVKYREEVSRPIQEAMEFMRRIESQLNMLSNNGPLRIFSEDKCEGVGSSEEDEQENSGGDEESGVVGEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGIHHPHPHHNNHHQNSSSLYMDSHGHYIMPDGQHYRLPP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00043 396 Gene3D - 289 351 - -
Stsc60421g00043 396 SMART HOX_1 286 351 IPR001356 GO:0003677
Stsc60421g00043 396 CDD homeodomain 296 348 IPR001356 GO:0003677
Stsc60421g00043 396 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Stsc60421g00043 396 Pfam KNOX2 domain 172 216 IPR005541 GO:0003677|GO:0005634
Stsc60421g00043 396 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 355 - -
Stsc60421g00043 396 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Stsc60421g00043 396 Coils Coil 199 219 - -
Stsc60421g00043 396 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Stsc60421g00043 396 SMART ELK_2 176 196 IPR005539 GO:0003677
Stsc60421g00043 396 SMART ELK_2 264 285 IPR005539 GO:0003677
Stsc60421g00043 396 MobiDBLite consensus disorder prediction 1 21 - -
Stsc60421g00043 396 Pfam KNOX1 domain 118 160 IPR005540 GO:0003677|GO:0005634
Stsc60421g00043 396 SUPERFAMILY Homeodomain-like 285 362 IPR009057 -
Stsc60421g00043 396 MobiDBLite consensus disorder prediction 361 380 - -
Stsc60421g00043 396 FunFam Homeobox protein knotted-1-like 2 289 351 - -
Stsc60421g00043 396 Pfam ELK domain 264 285 IPR005539 GO:0003677
Stsc60421g00043 396 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Stsc60421g00043 396 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Stsc60421g00043 396 MobiDBLite consensus disorder prediction 229 259 - -
Stsc60421g00043 396 ProSitePatterns 'Homeobox' domain signature. 322 345 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00043 Stsc-Chr60421 229294 235111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00043 58 396 Homeobox Transcription Factor Family AT4G08150 63.714 3.52e-136 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc60421g00043 KNOX2 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00043 - - vum:124822256 459.914