Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00042 ATGTCTAATAATAACCAAGATCTTGGACTTGGTCTTGGTCTTGGCCTTGTTCATGGTGAAAACTGCAGCAACAAGAAGAAGAAGGAAGAGGAGGGTCATCCATGCAGCAATAATAATAAGGCATCATACCCATCTCTTACTTTAGGACCACAAGAAGCTTCTAGATCTTCTGAAACCACAACAGTTTCTTCATTTTCCAACTCATCGTGTAGCATCAAGAGGGAGAGAGATCAAGAATTATTGGTGCCAAAGTTATTAGACGAAGAAAACAAGATGAATAACAATAATCCATGGAAGCTTATTGATGTTGATGTAGATGATGAGAGTAACAATAATGGTAACCCCAGAAAGAAACTTAGACTCACCAAACAACAATCCGCACTCTTAGAGGAAAGCTTCAAACACCATTCCACTCTCAATCCGAAGCAAAAGCAAGAGTTGTCAAGGAAACTCAACCTCAGAGCCAGGCAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCAAGGACAAAATTGAAGCAAACGGAAGTGGAGTGTTCGGTATTGAAGAAGTGTTGTGAGAGGCTAAGAGAAGAGAACAAGAGGCTGCAAAAGGAGCTGCAACATCTAAAATCCATGACCCAAACTGGACCCACCACCTTGTACCTTCATCAGCACCAGGTTCCGCCATGCCCTTCTTGTGAAACCAATAATAATAACAACTCAAACCTCCATCATCCTCGCTTCTTTAAAACTACCTACCCATTCACCCAATCATCCGCAGCTTGCTAG 768 0.4232 MSNNNQDLGLGLGLGLVHGENCSNKKKKEEEGHPCSNNNKASYPSLTLGPQEASRSSETTTVSSFSNSSCSIKRERDQELLVPKLLDEENKMNNNNPWKLIDVDVDDESNNNGNPRKKLRLTKQQSALLEESFKHHSTLNPKQKQELSRKLNLRARQVEVWFQNRRARTKLKQTEVECSVLKKCCERLREENKRLQKELQHLKSMTQTGPTTLYLHQHQVPPCPSCETNNNNNSNLHHPRFFKTTYPFTQSSAAC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00042 255 MobiDBLite consensus disorder prediction 1 69 - -
Stsc60421g00042 255 SMART halz 172 216 IPR003106 GO:0006355|GO:0043565
Stsc60421g00042 255 Pfam Homeodomain 116 170 IPR001356 GO:0003677
Stsc60421g00042 255 SUPERFAMILY Homeodomain-like 113 180 IPR009057 -
Stsc60421g00042 255 MobiDBLite consensus disorder prediction 21 35 - -
Stsc60421g00042 255 MobiDBLite consensus disorder prediction 36 69 - -
Stsc60421g00042 255 CDD homeodomain 115 173 IPR001356 GO:0003677
Stsc60421g00042 255 Gene3D - 108 178 - -
Stsc60421g00042 255 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677
Stsc60421g00042 255 Coils Coil 171 208 - -
Stsc60421g00042 255 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981|GO:0006355
Stsc60421g00042 255 SMART HOX_1 114 176 IPR001356 GO:0003677
Stsc60421g00042 255 FunFam Homeobox-leucine zipper protein 18 102 177 - -
Stsc60421g00042 255 Pfam Homeobox associated leucine zipper 172 206 IPR003106 GO:0006355|GO:0043565
Stsc60421g00042 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00042 Stsc-Chr60421 224409 225792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00042 106 255 Homeobox Transcription Factor Family AT4G37790 55.952 3.80e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60421g00042 Homeodomain 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00042 K09338 - gmx:100807072 190.274