Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00039 ATGGGTAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCGGAAGAAGATTCCAAACTCAAGTCCTACATCGAACAACATGGCACTGGTGGTAACTGGATTGCTTTGCCCCAAAAGATCGGGCTTAAGAGATGCGGCAAGAGTTGCCGTCTGCGGTGGCTCAACTACCTTCGCCCTAATCTCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTACTATTGGAAGCAGGTGGTCGGTGATTGCAGCCCAGTTGCCTGGAAGAACAGACAACGACATAAAGAATTATTGGAACACCAAGCTCAAGAAGAAGCTTCTGGGAAAACACCGCACCAATAAAGACCACCACCACCACCAAGCACGTTCTAGAAAGCAAGCAATAACAAGTAACAATGGTAATGGTAGCCGGGATTATTCATCATCATCATCATCTACTACTGCTACTCATCATCATCAACAGCAACCGTATTATTGGTCACACATGCACATGCCTGTGCTGCCATTACCGCCGCCGCCACCACCATTACCACCGTTGCCATACGCAGAAGAAAACAATCAATTACCGAGTTTCAACGACCAAGACTCTCTCAGGAAACTTCTTATCAAGCTTGGAGGAAAATTCTCCAACAACAACAACAGTAGCAGTGATCATGATTATCAGCCACCACTTGACGATGGAGTAATCATGAATTTTCATCATCAATTCCCTCCTTATTATGAAGAAGAACAACAAATTCTTCATCATCATCATATTGCTGGTTCATCATCCAGTTGCATGAATAATAATTCGGCTAGCAACAACAGCAGCAGCGTTGTTGAACAATTCTCACAAAATGATAACAATAACAACAATTTCAACGCAGCAATAGTTGGGGAAATGGTGTCTGCTAACAATAATTATCCACAAAGGTTAGATGGGTTGGAATTCTTTTACGGTGAGGAAATAATGGGGGTAACTACTACTACTGATGAGAAGATAATAGAAACTGGTGCTGCTTCTAATAATTATCCTCCTCTTCATGATGAAGATTTCCTGCAATAG 1077 0.4318 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVTIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGKHRTNKDHHHHQARSRKQAITSNNGNGSRDYSSSSSSTTATHHHQQQPYYWSHMHMPVLPLPPPPPPLPPLPYAEENNQLPSFNDQDSLRKLLIKLGGKFSNNNNSSSDHDYQPPLDDGVIMNFHHQFPPYYEEEQQILHHHHIAGSSSSCMNNNSASNNSSSVVEQFSQNDNNNNNFNAAIVGEMVSANNNYPQRLDGLEFFYGEEIMGVTTTTDEKIIETGAASNNYPPLHDEDFLQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00039 358 MobiDBLite consensus disorder prediction 136 166 - -
Stsc60421g00039 358 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc60421g00039 358 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc60421g00039 358 FunFam Transcription factor RAX3 7 68 - -
Stsc60421g00039 358 CDD SANT 71 111 IPR001005 -
Stsc60421g00039 358 MobiDBLite consensus disorder prediction 119 166 - -
Stsc60421g00039 358 SMART sant 67 115 IPR001005 -
Stsc60421g00039 358 SMART sant 13 64 IPR001005 -
Stsc60421g00039 358 Gene3D - 70 143 - -
Stsc60421g00039 358 PANTHER OS09G0431300 PROTEIN 1 299 - -
Stsc60421g00039 358 MobiDBLite consensus disorder prediction 180 199 - -
Stsc60421g00039 358 CDD SANT 16 62 IPR001005 -
Stsc60421g00039 358 Gene3D - 7 68 - -
Stsc60421g00039 358 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc60421g00039 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc60421g00039 358 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc60421g00039 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc60421g00039 358 FunFam Transcription factor MYB36 70 141 - -
Stsc60421g00039 358 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc60421g00039 358 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00039 Stsc-Chr60421 202261 204094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00039 1 302 MYB Transcription Factor Family AT3G49690 48.693 4.63e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60421g00039 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00039 K09422 - csin:114261621 308.916