Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00031 ATGGTTTCTCATCATAATAATGAATTCTCCAATTCATTGTTGTACCCTCTTGTCTTGGAAAACCAGCAGGGTCCTCAAATTGTTCAACACATGTCTAGGGATATGGTTTCAAATTCAAACCCCAAGGTTCAGGTTCCTATGTCCTATGGAAGTGGGAGCTTCTCGGAAATGGTTGGCTCCTTTCTCCAATCTCCAAATAATGAGCACTCACAGGGAGAAGGTGAAGAAGATTCAGGATCAGCACCTTTTGGAAATAGAAGAAGAAAGAGAGGTCATGAATATAAGAATGATGAAGGGGGTGTAAGTGTGACTAAAGATTGTTCTGGGAAGAGCTCTGATGGTGGTAGAAAAGATCAAGATGATCAGAAGAAATCAAAAGTGGAAGAAAATCAAGACAAAAGTACTCAAAGTGGAGAAGCAGCACCTAAAGAGAATTTCATTCATGTGAGAGCAAGAAGAGGCCAAGCTACTAACAGTCACAGCCTTGCTGAAAGGGTAAGAAGAGAAAAGATTAGTGAGAGAATGAGGTTGCTTCAAGAACTTGTTCCTGGATGCAGCAAGATAACTGGCAAAGCAGTGATGCTTGATGAGATTATAAACTATGTGCAATCATTGCAACAGCAGGTTGAGTTTTTGTCGATGAAACTTGCCACTGTGAACCCGGAGCTGAATTTGGATCTAGAGCGGATCTTATCAAAAGATATTCTGCAATCAAGAATGGGTGGATATGGTGGTGGAATAAGCTGCTCTCAAGCATTCCCCAGTTCTAGCTTCCAAGGAACACTAGTGCCCATGCCTACAATTTCAAATCAGCTCCCTCCATTGCCCCAGAGTGTGTTGGAGCATGAGTTCCAAAACTTGTATGGAATGAGCTATGATTCTAGTACAGCTCTTGGGAACATGGGACACAATAATGGAGGGTCCAAATCAGAGTTATAG 939 0.4196 MVSHHNNEFSNSLLYPLVLENQQGPQIVQHMSRDMVSNSNPKVQVPMSYGSGSFSEMVGSFLQSPNNEHSQGEGEEDSGSAPFGNRRRKRGHEYKNDEGGVSVTKDCSGKSSDGGRKDQDDQKKSKVEENQDKSTQSGEAAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCSKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDLERILSKDILQSRMGGYGGGISCSQAFPSSSFQGTLVPMPTISNQLPPLPQSVLEHEFQNLYGMSYDSSTALGNMGHNNGGSKSEL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00031 312 MobiDBLite consensus disorder prediction 110 133 - -
Stsc60421g00031 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983
Stsc60421g00031 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 222 IPR036638 GO:0046983
Stsc60421g00031 312 Gene3D - 152 227 IPR036638 GO:0046983
Stsc60421g00031 312 Pfam Helix-loop-helix DNA-binding domain 158 206 IPR011598 GO:0046983
Stsc60421g00031 312 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 261 IPR024097 GO:0006355
Stsc60421g00031 312 FunFam Basic helix-loop-helix transcription factor 152 224 - -
Stsc60421g00031 312 CDD bHLH_AtBPE_like 145 230 - -
Stsc60421g00031 312 SMART finulus 161 211 IPR011598 GO:0046983
Stsc60421g00031 312 MobiDBLite consensus disorder prediction 56 145 - -
Stsc60421g00031 312 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00031 Stsc-Chr60421 147043 149052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00031 63 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 52.191 1.08e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60421g00031 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00031 - - adu:107461155 500.36