Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60421g00031 | ATGGTTTCTCATCATAATAATGAATTCTCCAATTCATTGTTGTACCCTCTTGTCTTGGAAAACCAGCAGGGTCCTCAAATTGTTCAACACATGTCTAGGGATATGGTTTCAAATTCAAACCCCAAGGTTCAGGTTCCTATGTCCTATGGAAGTGGGAGCTTCTCGGAAATGGTTGGCTCCTTTCTCCAATCTCCAAATAATGAGCACTCACAGGGAGAAGGTGAAGAAGATTCAGGATCAGCACCTTTTGGAAATAGAAGAAGAAAGAGAGGTCATGAATATAAGAATGATGAAGGGGGTGTAAGTGTGACTAAAGATTGTTCTGGGAAGAGCTCTGATGGTGGTAGAAAAGATCAAGATGATCAGAAGAAATCAAAAGTGGAAGAAAATCAAGACAAAAGTACTCAAAGTGGAGAAGCAGCACCTAAAGAGAATTTCATTCATGTGAGAGCAAGAAGAGGCCAAGCTACTAACAGTCACAGCCTTGCTGAAAGGGTAAGAAGAGAAAAGATTAGTGAGAGAATGAGGTTGCTTCAAGAACTTGTTCCTGGATGCAGCAAGATAACTGGCAAAGCAGTGATGCTTGATGAGATTATAAACTATGTGCAATCATTGCAACAGCAGGTTGAGTTTTTGTCGATGAAACTTGCCACTGTGAACCCGGAGCTGAATTTGGATCTAGAGCGGATCTTATCAAAAGATATTCTGCAATCAAGAATGGGTGGATATGGTGGTGGAATAAGCTGCTCTCAAGCATTCCCCAGTTCTAGCTTCCAAGGAACACTAGTGCCCATGCCTACAATTTCAAATCAGCTCCCTCCATTGCCCCAGAGTGTGTTGGAGCATGAGTTCCAAAACTTGTATGGAATGAGCTATGATTCTAGTACAGCTCTTGGGAACATGGGACACAATAATGGAGGGTCCAAATCAGAGTTATAG | 939 | 0.4196 | MVSHHNNEFSNSLLYPLVLENQQGPQIVQHMSRDMVSNSNPKVQVPMSYGSGSFSEMVGSFLQSPNNEHSQGEGEEDSGSAPFGNRRRKRGHEYKNDEGGVSVTKDCSGKSSDGGRKDQDDQKKSKVEENQDKSTQSGEAAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCSKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDLERILSKDILQSRMGGYGGGISCSQAFPSSSFQGTLVPMPTISNQLPPLPQSVLEHEFQNLYGMSYDSSTALGNMGHNNGGSKSEL | 312 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60421g00031 | 312 | MobiDBLite | consensus disorder prediction | 110 | 133 | - | - | |
Stsc60421g00031 | 312 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 155 | 205 | IPR011598 | GO:0046983 | |
Stsc60421g00031 | 312 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 153 | 222 | IPR036638 | GO:0046983 | |
Stsc60421g00031 | 312 | Gene3D | - | 152 | 227 | IPR036638 | GO:0046983 | |
Stsc60421g00031 | 312 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 206 | IPR011598 | GO:0046983 | |
Stsc60421g00031 | 312 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 58 | 261 | IPR024097 | GO:0006355 | |
Stsc60421g00031 | 312 | FunFam | Basic helix-loop-helix transcription factor | 152 | 224 | - | - | |
Stsc60421g00031 | 312 | CDD | bHLH_AtBPE_like | 145 | 230 | - | - | |
Stsc60421g00031 | 312 | SMART | finulus | 161 | 211 | IPR011598 | GO:0046983 | |
Stsc60421g00031 | 312 | MobiDBLite | consensus disorder prediction | 56 | 145 | - | - | |
Stsc60421g00031 | 312 | MobiDBLite | consensus disorder prediction | 70 | 100 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60421g00031 | Stsc-Chr60421 | 147043 | 149052 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60421g00031 | 63 | 312 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G10120 | 52.191 | 1.08e-73 | 229 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Stsc60421g00031 | HLH | 3.7e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60421g00031 | - | - | adu:107461155 | 500.36 |