Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00030 ATGAAGTGGATGAATAGTAACATGAGCAGTGATGATGATGGTAACAATAATAATCAGCATCATCAGAGCTGGTTGGGGTTCTCTCTCTCCCCACATCATCAAATGAAATTCGACCTTCCTAATTCTAATTCTTCCTCATCTTCTTCTTGCTCTTCCTCATACGGTGGGGATCACACTGCCTTTCATCCTCATCATCAGTTGAGTGTGATGCCTCTCAAATCAGATGGCTCACTTTGCATCATGGAAGCTCTCACTAGATCACATCAACCACAACAACAAGTGATGGTGGGTAGTTGTTCGTCTCCAAAACTGGAAAACTTTCTGGGTGGTGCAACGATGGGAACACACGAAAGAGAGGCAATGGCTCTAAGCCTTGACACCATGTACTACCCCCATAGAGGGTTTGTCTCATCAGAGCCTCTCTTCAGGCATCCACCATATTACTCATCACTTGCCTGCCATGCCATGTACCAACCACCACCTCCAACCGTAGAGGAACAACAACCCAAGGGACCACATCAAATGCCCCACATAGCACAACAACAAGGCATTGCTGGTGGTGGTGGAGCGGTGGAGTTGCAATCTTTGAGTCTGTCAATGAGTCCAGGGTCAGAGTCAAGTTGTGTAACAGCAGCAAGGCATGAGAATGGGAAGAGCAGTGAGTCAATAATGGACAATAGCAACAAGAAGAGAGGGCTAAGTAACAAGCAACCAGTCCACAGAAAATCCATTGACACTTTTGGTCAGAGAACTTCTCAGTATCGAGGTGTCACCAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAACACTTGCAAGAAGGAAGGCCAGACTAGGAAAGGAAGACAAGTATATTTGGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTTAAGTACTGGGGACCTTCAACCCACATCAACTTTCCATTGGAAAATTACCAAACCCAACTTGAGGAGATGAAGAACATGACTAGGCAGGAATATGTCGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCTAGGGGTGCTTCAATGTACAGAGGGGTCACAAGGCACCATCAGCATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCTGGCAACAAGGACCTCTACCTTGGCACCTTCAGCACTCAAGAGGAGGCAGCAGAGGCATATGATGTAGCAGCAATCAAATTCCGTGGTTCCAATGCAGTTACAAACTTTGACATATCAAGATACGATGTGGAAAGGATCATGGCCAGTAACACTTTGCTTGCTGGGGAGCTAGCTAGGAGAAACAACAACAAAGATAATAATAATAATAGCATTGAAGCACCCCCAATATGTGAGGCCATTCAGTACAACAACAACAATGTGGAAGCAGTTCAAGCTAATAGAAACAACAATGATGATTCAAACTGGAAGATGGTTTTGTACAATAATGGCTGTGATGATGATCTGATTGGGATTGAAGGGCAGCAGCAACCACTAATGGAGGAGGAATGTAACAAGATTGCAAACCATTTTTCTAACCCTTCTTCACATGTGACAAGCCTAAGCAGCTCATCAAGAGAAGCTAGCCCTGATAAAATAATGGTGTTTCCAAATCCAAAGGCTCTTCAACTTGAACCAAAGATGGTTCTTAACAACAACCCTTTAACTAGCAGTGGTAGTGTTGTTGGTTCTTGGTTCCCTTCTCATCAAATGAGGCCAGCTTCTGCTGCAGCTATCTCTTTGTCTCACTTGCCTGTTTTTGCTGCTTGGAACGATACTTAG 1788 0.4463 MKWMNSNMSSDDDGNNNNQHHQSWLGFSLSPHHQMKFDLPNSNSSSSSSCSSSYGGDHTAFHPHHQLSVMPLKSDGSLCIMEALTRSHQPQQQVMVGSCSSPKLENFLGGATMGTHEREAMALSLDTMYYPHRGFVSSEPLFRHPPYYSSLACHAMYQPPPPTVEEQQPKGPHQMPHIAQQQGIAGGGGAVELQSLSLSMSPGSESSCVTAARHENGKSSESIMDNSNKKRGLSNKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNTCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISRYDVERIMASNTLLAGELARRNNNKDNNNNSIEAPPICEAIQYNNNNVEAVQANRNNNDDSNWKMVLYNNGCDDDLIGIEGQQQPLMEEECNKIANHFSNPSSHVTSLSSSSREASPDKIMVFPNPKALQLEPKMVLNNNPLTSSGSVVGSWFPSHQMRPASAAAISLSHLPVFAAWNDT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00030 595 FunFam AP2-like ethylene-responsive transcription factor 354 415 - -
Stsc60421g00030 595 SMART rav1_2 253 325 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 SMART rav1_2 355 419 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 PRINTS Ethylene responsive element binding protein signature 395 415 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 SUPERFAMILY DNA-binding domain 252 321 IPR016177 GO:0003677
Stsc60421g00030 595 MobiDBLite consensus disorder prediction 214 238 - -
Stsc60421g00030 595 CDD AP2 252 319 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 488 - -
Stsc60421g00030 595 ProSiteProfiles AP2/ERF domain profile. 253 319 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 Gene3D AP2/ERF domain 252 321 IPR036955 GO:0003700|GO:0006355
Stsc60421g00030 595 Gene3D AP2/ERF domain 355 415 IPR036955 GO:0003700|GO:0006355
Stsc60421g00030 595 FunFam AP2-like ethylene-responsive transcription factor ANT 252 321 - -
Stsc60421g00030 595 ProSiteProfiles AP2/ERF domain profile. 355 413 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 MobiDBLite consensus disorder prediction 1 55 - -
Stsc60421g00030 595 CDD AP2 354 415 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 SUPERFAMILY DNA-binding domain 354 415 IPR016177 GO:0003677
Stsc60421g00030 595 Pfam AP2 domain 253 311 IPR001471 GO:0003700|GO:0006355
Stsc60421g00030 595 Pfam AP2 domain 356 405 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00030 Stsc-Chr60421 132694 136248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00030 67 439 AP2-EREBP Transcription Factor Family AT4G37750 61.787 1.69e-160 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc60421g00030 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00030 K09285 - qsa:O6P43_015953 601.282