Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00026 ATGAATTTGAAGATGGATTCTGATAAAGCGAAGCTCTTTGTTGGGGGTATCTCCCGTGAGACCTCCGAGCACGTTCTCAGAGATCACTTCGGAAGGTACGGCGTCGTTTTGGATTGCACCATCTCCTTGGACCGCACTACCCGAACCCCTCGAGGTTTCGGCTTCGTTACTTTCTCCGATCTCTCTGCAGCTGATAAAGCTCTTCAGGACACTCATGTCATACTCGGGAGAACGGTGGAAGTGAAAAAAGCGATACCAAGAAGTGAGCAGCAACAGCAAAACCAGAACCAAAACCAAGTACAGAATAGGGGAGCGAGTAACTATAGTTGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGGGGTTTGTCTGCTGGTATCTCTGAGGAGGAGTTCAGGAAATATTTCGAGCGGTTTGGTCGTATAACTGATGTAGTGGTGATGCAGGACAGCGTGACTCATCGGCCTAGGGGATTTGGTTTCATCACTTTTGATTCCGAAGAATCGGTTCAAAATGTTATGGTGAAAAGTTTCCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCAGTTCCAAAAGAGGGAAACTATGGTTATGATAGTTTTAATAATAAGTTAAGATACAGGAGTGAAAGAGGGGCCTCTAAAAGTTTTCCTGCTTATAGTCCTAGCTACACAATTCCTGGCTTTGCGCCTCAGCCGTGGTATAGTAATGATGGTGTTTATGTCTATGGATCAAGCAACTATGGTTGGTACCCTATGGGCGGCTATGGGAGTAATGGATATGCAGTACCGTCTGATATTTCTCGGAACTACTGGTATGGGCCCATGATAGCCAGTCCTCAGGTGCCTTATGCTAATGCTTTGCCTAATACTGCTTATATGGGTGGTAGGGTTGGATTAGTAGGTAATGTAGTTGGAACTAGAGGGTTCAATGGCATACTTGGGGCTGCAAGAAATATGAAATTTGATCAACCTCTTACTGCCAATGGATTCTTTCCAGGCAATGTGACATTACATCAAGGTGTGAATCAGGATGTAATCTCTTCAAATTTGAAAGGATCAAATGGTGAAATTCCTAGTTGA 1104 0.4402 MNLKMDSDKAKLFVGGISRETSEHVLRDHFGRYGVVLDCTISLDRTTRTPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQQQNQNQNQVQNRGASNYSCNDCSSDNIRTKKIFVGGLSAGISEEEFRKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNYGYDSFNNKLRYRSERGASKSFPAYSPSYTIPGFAPQPWYSNDGVYVYGSSNYGWYPMGGYGSNGYAVPSDISRNYWYGPMIASPQVPYANALPNTAYMGGRVGLVGNVVGTRGFNGILGAARNMKFDQPLTANGFFPGNVTLHQGVNQDVISSNLKGSNGEIPS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00026 367 Gene3D - 2 113 IPR012677 -
Stsc60421g00026 367 Gene3D - 118 200 IPR012677 -
Stsc60421g00026 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Stsc60421g00026 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Stsc60421g00026 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 189 IPR000504 GO:0003723
Stsc60421g00026 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Stsc60421g00026 367 SMART rrm1_1 122 194 IPR000504 GO:0003723
Stsc60421g00026 367 SUPERFAMILY RNA-binding domain, RBD 6 112 IPR035979 GO:0003676
Stsc60421g00026 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 305 - -
Stsc60421g00026 367 FunFam RNA-binding protein 1 117 207 - -
Stsc60421g00026 367 MobiDBLite consensus disorder prediction 86 107 - -
Stsc60421g00026 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Stsc60421g00026 367 CDD RRM2_Hrp1p 122 199 - -
Stsc60421g00026 367 SUPERFAMILY RNA-binding domain, RBD 91 207 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00026 Stsc-Chr60421 116614 118476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00026 12 259 Eukaryotic Initiation Factors Gene Family AT2G36660 25.475 2.02e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00026 K14411 - gmx:100816822 527.709