Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00023 ATGGATCTTGTTGGGGCGGTGGGTTTGGATGGGTTGGTGGTGGGTGGTTCTATTGGATGTTCTGATGCTGAGACAAAGCACAAGTGGTACGGATCTGGCTTCTTGAAGCAGGAGAGATCTGGTTGTGGTGACAACACCAACAACCAAGATGATGATGATGAGTATTGGAGGAGCAACAAACTGGCTAAGACTGAGAGGAACTCATCATCATCATCAACCTTGCTGAGATCCAATGCAACTCTCTTCTCTGATGTTCCTGCTTCCAACCACCACCACAACCAACAACAACAAATGCTAAGCTTCTCTTCCCCAAAGTCAGACACTACTAACTCCCTCAATCCCTCATTCCCATATCATTACCTCCCCTTATCAACTTCCAACAGAAATACAGGATGTTACAGTTGGGGAAGCAATAGCATGCATGGGAATGGGAATGGGATTGGGATTCGAGGGGCATTCACTCCATCACAATGGATGGAGCTAGAACAGCAGGCCCTGATCTACAAGTATATAACAGCAAATGTGCCAGTACCATCTCCCCTGCTGATTCCAATAAAGAAAGCCCTTCACTCTGCGGGCTTCTCTCACTTGTTCAGGCCCAGTGCAGTGGGATGGGCTGGCTTCCATCTTGGTTTCTCAAACAGCACCGATCCAGAGCCAGGCAGGTGCAGGAGAACAGATGGCAAGAAATGGCGTTGCTCCAGAGATGCCGTTGTTGACCAGAAGTACTGTGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAACCCCCGCCCCCACCGGGACAACCACCACCTCCACTACCACTACCACCACCACCTCCCTCGTGGTTCCCGGAAACACTCCTTCCAACAACACCCTCACCTTTGCACAACATGATCCAAAGAATATGCATCATCCTCTTGCATCATCTGATTCTTCACCTCCTACTAACATCGGCAGGATGTTTATGAATAATGATAAGGAGAGTAATGGCAGTGAGAGAATCCCTGAAGCTCAAGATGCACTTCCAATGCTGCCACCAATTCTTGAACTGAAACCAAAGGAAAACCCCTTCCTCATTCACAAGCACCAAATCCCATCATACCAACAAGAATCTTCCAGGAATGAGTTTGGCCTTGTCACTTCTGATTCCTTACTTAACCCTTCCCACAAGACCACCAGAACTGAAACTGATTCCCATCATTCCCTCAGGCATTTCATCGACGATTGGCCGAAGACTGAGACCGATCGCTCCGCCTTATCGTCGTGGCCGGAGTCGGAGAGGACCGAGCTCTCGATTTCCATTTCCAATGACTTCATGTCATCAACCTCCTCTCCCACCAATGACAAGGTCACTCTGTCACCCCTGCGTCTGTCAAGGGAACTAGACCCGATTCAAATGGGTTTGGGAGTGGGAAACAATGCTCTAAGTGATTCAACAAACTCATCAAGGCAAGCTAACTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAAGTTCTCAATCTCAGCAGCACTAACAACAACAACAACAGTTTAAGTGATGATCAATGTGGCAAGAACAACAATTCCTCTTCTGCACTGAACCTGATGAGTGATGGGTGGGATAATAGCCCTCCATTAGGGTCTTCTCCAACTGGGGTTTTGCAGAAGACAGCGTTTGGATCTTTATCAAACAGCAGTGCTGGGAGCAGCCCAAGGGCAGAGAATAATAATAAAACTCAAGAAGGTGCAAGCTTGTGCAATGATCTTCTAATGCCTGCATTGTAA 1779 0.4806 MDLVGAVGLDGLVVGGSIGCSDAETKHKWYGSGFLKQERSGCGDNTNNQDDDDEYWRSNKLAKTERNSSSSSTLLRSNATLFSDVPASNHHHNQQQQMLSFSSPKSDTTNSLNPSFPYHYLPLSTSNRNTGCYSWGSNSMHGNGNGIGIRGAFTPSQWMELEQQALIYKYITANVPVPSPLLIPIKKALHSAGFSHLFRPSAVGWAGFHLGFSNSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVETPAPTGTTTTSTTTTTTTSLVVPGNTPSNNTLTFAQHDPKNMHHPLASSDSSPPTNIGRMFMNNDKESNGSERIPEAQDALPMLPPILELKPKENPFLIHKHQIPSYQQESSRNEFGLVTSDSLLNPSHKTTRTETDSHHSLRHFIDDWPKTETDRSALSSWPESERTELSISISNDFMSSTSSPTNDKVTLSPLRLSRELDPIQMGLGVGNNALSDSTNSSRQANWIPITWESSMGGPLGEVLNLSSTNNNNNSLSDDQCGKNNNSSSALNLMSDGWDNSPPLGSSPTGVLQKTAFGSLSNSSAGSSPRAENNNKTQEGASLCNDLLMPAL 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00023 592 Pfam WRC 218 260 IPR014977 -
Stsc60421g00023 592 MobiDBLite consensus disorder prediction 508 582 - -
Stsc60421g00023 592 PANTHER GROWTH-REGULATING FACTOR 5 92 436 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc60421g00023 592 SMART QLQ_2 151 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc60421g00023 592 MobiDBLite consensus disorder prediction 84 106 - -
Stsc60421g00023 592 ProSiteProfiles QLQ domain profile. 152 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc60421g00023 592 Pfam QLQ 152 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc60421g00023 592 MobiDBLite consensus disorder prediction 305 328 - -
Stsc60421g00023 592 ProSiteProfiles WRC domain profile. 217 261 IPR014977 -
Stsc60421g00023 592 MobiDBLite consensus disorder prediction 261 297 - -
Stsc60421g00023 592 MobiDBLite consensus disorder prediction 249 333 - -
Stsc60421g00023 592 MobiDBLite consensus disorder prediction 508 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00023 Stsc-Chr60421 100565 103557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00023 31 580 GRF Transcription Factor Family AT2G22840 40.489 4.08e-89 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc60421g00023 WRC 5.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00023 - - aprc:113865097 653.284