Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00020 ATGTGCCCCAACGAGTTCAACGACGATGAAACGCTGCATTTGATCCCAAAGTGTAGCCACATGTTCCACTCTGATTGCATCGACGCATGGCTCGCTAACCACTCTACCTACCCCATCCCTGCTCCCGAATCCAATGGTTTACAGATATCTGAAATCACACAGATTAATAACGGTAACGATACCGGAGGAGGAGCGATGGTCAACGGTCTCGACGGATCACTCACTGGTCCAGCCGAGGGAGAGCTTGGAGCGGTTTACGTTGAGGCTGCCAGAGGGGGAGCGGAACCGGCTGCTTATGAGTTTGACACTGAGACGCGCCCCGGCGGCTCCACGTTCGCAAGGGAGAGCAACGTGAGGAGAGGGTTTAGGGGAGTGTGGGTCCCGGGAGGAGCTACATGCAGTATGTACGATTTGGTCGGTTGGACCGATGAGGGTTCAATCGGCCTTCCAGCAGGTCGCCAGTTAACTTTTCTACTGCGAAGGGGAACAAGGAAGTGGTGGTGA 504 0.5496 MCPNEFNDDETLHLIPKCSHMFHSDCIDAWLANHSTYPIPAPESNGLQISEITQINNGNDTGGGAMVNGLDGSLTGPAEGELGAVYVEAARGGAEPAAYEFDTETRPGGSTFARESNVRRGFRGVWVPGGATCSMYDLVGWTDEGSIGLPAGRQLTFLLRRGTRKWW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00020 167 PANTHER RING-H2 FINGER PROTEIN ATL16 2 39 IPR044600 GO:0016567|GO:0016740
Stsc60421g00020 167 SUPERFAMILY RING/U-box 2 36 - -
Stsc60421g00020 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 41 IPR013083 -
Stsc60421g00020 167 Pfam Ring finger domain 2 36 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00020 Stsc-Chr60421 90559 91214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00020 1 39 Rapid Response to Elicitors AT3G05200 64.103 1.65e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00020 K10664 - cave:132184649 78.1814