Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00006 ATGCAAGAAACAATGCCTCCTCCACCATTAAAGACCTTGATTGAAGAGATGGAGTCATCTTCAATAGAAGATGTTCCTTGGGTTTTCATCTGTCCCATATCACTGGAGCCAATGAGAGACCCAGTCACACTCTGCACTGGCCAAACCTACGACAGGTCCAACATCCTCAAATGGCTGTCCCTTGGCCACAACACTTGTCCCACCACCATGCAAGACCTTTGGGACCATTCCCTCACCCCCAACACCACCCTCCACACCTTCATCTTCACATGGTTCTCTCAGAAGTACTTCTCCATCAAGAAAAGCCTCCAAGATGTTCAAGGCAGAGCCTTAAACCTCTTGGAATCACTCAAAAAGGTTAAGGGTCAAGCAAGAGTCAAGTCCCTCAAGGAACTTCGCCAGCTTCTTGATTCTCATCCTTCAATAAGAAACACAGTTGTGGAACACAACGGGGTTGCCTCGGTTTCTTCATTGTTAGGACCTTTCACTTCCCATGTTGTTGGGTCAGAAGCCATTGGGATACTAGTGAAGCTGGATTTGAGTTCTGAGGTTAAGAAGAATCTGATGAAGCCAGCAAAGGTGTCTTTGCTGGTGGATATCATGAACGAGGGAACCATTGAGACAAAGATGAACTGTGCAAAGTTGATTGAGATGTTGCTGTTAGAAGGACACGTGTCACTGTCACCAAGCTTGAGTCTTTTGGTTGGTTTGTTACGGTTAGTTAGAGAAAAGAAGCACCCATCAAGTGGGGTGGTCTTGAATGGCCTCATACTGATAAAGAAGATGTGCAGTTATTACCAAGAATCAGTTATAACTTCCATTTTGAGCATTGGAGCGGTGCCCCAATTGGTGGATCTATTGCCAACTTTAAACAATGAATGCTTGGAGATAGCACTGTGTATTCTCGAATTGTTGTCAAAAACTCCAGAGGGAAGAATGGCGTTGAAAGATTGTCCCAATGTTGTGGTTAATGTGGTGACATTGTTGATGAGAGTCTCTGAAAGGTGCAAGCAATTTGCGCTTTCGATATTGTGGGGTATTTACAAGCTTGCACCGGAACAGTGTGCGTCTGAGGCTGTGGAGGCTGGTTTGGCGGGAAAGCTGCTTCTGGTGATTCAGAGCGGTTGCAACCCTATTTTGAAGGACATGTCTGTTGAGTTCTTGAAGTTATGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTGTATGCTTACCACAACAATTCAATGA 1236 0.4474 MQETMPPPPLKTLIEEMESSSIEDVPWVFICPISLEPMRDPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQDLWDHSLTPNTTLHTFIFTWFSQKYFSIKKSLQDVQGRALNLLESLKKVKGQARVKSLKELRQLLDSHPSIRNTVVEHNGVASVSSLLGPFTSHVVGSEAIGILVKLDLSSEVKKNLMKPAKVSLLVDIMNEGTIETKMNCAKLIEMLLLEGHVSLSPSLSLLVGLLRLVREKKHPSSGVVLNGLILIKKMCSYYQESVITSILSIGAVPQLVDLLPTLNNECLEIALCILELLSKTPEGRMALKDCPNVVVNVVTLLMRVSERCKQFALSILWGIYKLAPEQCASEAVEAGLAGKLLLVIQSGCNPILKDMSVEFLKLCSLNYSASIFISKCMLTTTIQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00006 411 CDD RING-Ubox_PUB 29 78 IPR045210 -
Stsc60421g00006 411 Pfam U-box domain 25 95 IPR003613 GO:0004842|GO:0016567
Stsc60421g00006 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 106 IPR013083 -
Stsc60421g00006 411 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Stsc60421g00006 411 Gene3D - 108 389 IPR011989 -
Stsc60421g00006 411 PANTHER WDSAM1 PROTEIN 17 397 IPR045185 GO:0061630
Stsc60421g00006 411 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Stsc60421g00006 411 SUPERFAMILY ARM repeat 114 392 IPR016024 -
Stsc60421g00006 411 SUPERFAMILY RING/U-box 15 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00006 Stsc-Chr60421 28489 29814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00006 10 411 U-box Gene Family AT3G49810 59.158 1.27e-163 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00006 - - aip:107608514 659.062