Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60421g00002 ATGCTGGATCCACCAAGAGCTGAAGTTAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGAGATAACAAGTCCACTGCTGAGTCCCTTTGCCGCAAGATAGGCGCTTTTGACCACTTTATAGAATTTTCCGAACGCTCTTACACTGCTTCTGAGTTTGAAGAACTTCCACCACTGCAACAAACTCTAGCATTGCAACGTATGGCACTTTTTACTAGAGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCTTTGCAGAATCAGAATGAAGTGGTTGCTATGACGGGTGATGGAGTCAATGATGCACCTGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCTGGAACAGCTGTTGCCAAGAGTGCATCAGACATGGTGCTTGCCGATGACAACTTTGCTTCGATTGTTGCGGCTGTTGCAGAGGGTAGGGCTATATACAACAATACAAAACAGTTTATAAGATACATGATATCATCCAATATTGGTGAAGTAGTCTGTATATTTGTCGCTGCTGTGCTTGGAATACCTGATACTCTTGCTCCTGTCCAGCTGCTTTGGGTCAATTTGGTTACTGATGGACTGCCTGCAACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTGTCAGGTTGGCTCTTCTTCCGTTATCTAGTAATTGGAGCTTATGTTGGCCTTGCAACCGTTGCTGGTTTTATTTGGTGGTTTGTTTATGCTGATAGTGGCCCTAAACTACCATACGTTGAACTGATGAATTTTGACACTTGCCCAACGAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTTCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAACCTAAGTGAAAATCAATCTCTTTTGGTCGTTCCTCCCTGGAGTAATATGTGGCTTGTTGGTTCTATAATCATAACTATGCTTCTTCACATACTAATTTTATATGTTCACCCGCTGTCGGTTCTTTTCTCTGTAACACCATTATCCTGGGATGACTGGATGGTTGTCTTTTATCTTTCAATACCTGTTATAATTATTGATGAGGTATTAAAGTTCTTCTCCAGAAATCCCATTGGTTTGAGGTTGAGATTGTGGTTTAGGAGGTCCGACCTACTTCCAAAAAGAGAATTGCGTGATAAGTAA 1242 0.4187 MLDPPRAEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHFIEFSERSYTASEFEELPPLQQTLALQRMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYADSGPKLPYVELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVVPPWSNMWLVGSIIITMLLHILILYVHPLSVLFSVTPLSWDDWMVVFYLSIPVIIIDEVLKFFSRNPIGLRLRLWFRRSDLLPKRELRDK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60421g00002 413 Gene3D - 111 392 - -
Stsc60421g00002 413 NCBIfam HAD-IC family P-type ATPase 74 188 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60421g00002 413 PRINTS P-type cation-transporting ATPase superfamily signature 126 138 - -
Stsc60421g00002 413 PRINTS P-type cation-transporting ATPase superfamily signature 19 29 - -
Stsc60421g00002 413 PRINTS P-type cation-transporting ATPase superfamily signature 103 122 - -
Stsc60421g00002 413 Gene3D - 1 63 IPR023214 -
Stsc60421g00002 413 FunFam Sodium/potassium-transporting ATPase subunit alpha 1 142 - -
Stsc60421g00002 413 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 100 392 - -
Stsc60421g00002 413 Pfam Cation transporting ATPase, C-terminus 187 386 IPR006068 -
Stsc60421g00002 413 Pfam haloacid dehalogenase-like hydrolase 3 117 - -
Stsc60421g00002 413 SUPERFAMILY HAD-like 2 206 IPR036412 -
Stsc60421g00002 413 PANTHER CALCIUM-TRANSPORTING ATPASE 1 389 - -
Stsc60421g00002 413 SUPERFAMILY Calcium ATPase, transmembrane domain M 152 388 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60421g00002 Stsc-Chr60421 47 7018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60421g00002 1 413 Primary Pumps ATPases(2) AT1G10130 86.683 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60421g00002 K05853 - gmx:100783509 778.089