LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60421g00001	ATGGATCTGTTGGAATTTTCTCGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGAAACCAATTGAATGTTTTGTTCTCCAAAGGTGCTCCAGAAAGCATAATTGCTAGATGTACAACAATTCTGTGTAATGACGATGGCTCAATTGTACCACTTACTGCTGATATTCGAGCTGAGCTGACGTCAAGGTTCCATAGTTTTGCAGGAAAAGAAACATTGCGGTGCCTAGCTTTGGCTTTGAAATGGATGCCCTCAGGTCAACAGATGTTGTCCTTTGATGATGAGAGAGATCTTACATTTATTGGGTTGGTTGGAATGCTGGATCCACCAAGAGCTGAAGTTAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGAGATAACAAGTCCACTGCTGAGTCCCTTTGCCGCAAGATAGGCGCTTTTGACCACTTTATAGAATTTTCCGAACGCTCTTACACTGCTTCTGAGTTTGAAGAACTTCCACCACTGCAACAAACTCTAGCATTGCAACGTATGGCACTTTTTACTAGAGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCTTTGCAGAATCAGAATGAAGTGGTTGCTATGACGGGTGATGGAGTCAATGATGCACCTGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCTGGAACAGCTGTTGCCAAGAGTGCATCAGACATGGTGCTTGCCGATGACAACTTTGCTTCGATTGTTGCGGCTGTTGCAGAGGGTAGGGCTATATACAACAATACAAAACAGTTTATAAGATACATGATATCATCCAATATTGGTGAAGTAGTCTGTATATTTGTCGCTGCTGTGCTTGGAATACCTGATACTCTTGCTCCTGTCCAGCTGCTTTGGGTCAATTTGGTTACTGATGGACTGCCTGCAACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTGTCAGGTTGGCTCTTCTTCCGTTATCTAGTAATTGGAGCTTATGTTGGCCTTGCAACCGTTGCTGGTTTTATTTGGTGGTTTGTTTATGCTGATAGTGGCCCTAAACTACCATACGTTGAACTGATGAATTTTGACACTTGCCCAACGAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTTCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAACCTAAGTGAAAATCAATCTCTTTTGGTCGTTCCTCCCTGGAGTAATATGTGGCTTGTTGGTTCTATAATCATAACTATGCTTCTTCACATACTAATTTTATATGTTCACCCGCTGTCGGTTCTTTTCTCTGTAACACCATTATCCTGGGATGACTGGATGGTTGTCTTTTATCTTTCAATACCTGTTATAATTATTGATGAGGTATTAAAGTTCTTCTCCAGAAATCCCATTGGTTTGAGGTTGAGATTGTGGTTTAGGAGGTCCGACCTACTTCCAAAAAGAGAATTGCGTGATAAGTAA	1557	0.4188	MDLLEFSRDRKMMSVLCSRNQLNVLFSKGAPESIIARCTTILCNDDGSIVPLTADIRAELTSRFHSFAGKETLRCLALALKWMPSGQQMLSFDDERDLTFIGLVGMLDPPRAEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHFIEFSERSYTASEFEELPPLQQTLALQRMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYADSGPKLPYVELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVVPPWSNMWLVGSIIITMLLHILILYVHPLSVLFSVTPLSWDDWMVVFYLSIPVIIIDEVLKFFSRNPIGLRLRLWFRRSDLLPKRELRDK	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60421g00001	518	Gene3D	-	4	109	IPR023299	GO:0000166
	Stsc60421g00001	518	Pfam	haloacid dehalogenase-like hydrolase	102	222	-	-
	Stsc60421g00001	518	FunFam	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	205	497	-	-
	Stsc60421g00001	518	Gene3D	-	110	252	IPR023214	-
	Stsc60421g00001	518	SUPERFAMILY	HAD-like	45	311	IPR036412	-
	Stsc60421g00001	518	SUPERFAMILY	Calcium ATPase, transmembrane domain M	257	493	IPR023298	-
	Stsc60421g00001	518	PRINTS	P-type cation-transporting ATPase superfamily signature	208	227	-	-
	Stsc60421g00001	518	PRINTS	P-type cation-transporting ATPase superfamily signature	231	243	-	-
	Stsc60421g00001	518	PRINTS	P-type cation-transporting ATPase superfamily signature	102	113	-	-
	Stsc60421g00001	518	PRINTS	P-type cation-transporting ATPase superfamily signature	124	134	-	-
	Stsc60421g00001	518	Pfam	Cation transport ATPase (P-type)	3	41	-	-
	Stsc60421g00001	518	Pfam	Cation transporting ATPase, C-terminus	292	491	IPR006068	-
	Stsc60421g00001	518	PANTHER	CALCIUM-TRANSPORTING ATPASE	2	494	-	-
	Stsc60421g00001	518	FunFam	Sodium/potassium-transporting ATPase subunit alpha	101	247	-	-
	Stsc60421g00001	518	NCBIfam	HAD-IC family P-type ATPase	179	293	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Stsc60421g00001	518	Gene3D	-	253	493	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60421g00001	Stsc-Chr60421	47	7018	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60421g00001	3	518	Primary Pumps ATPases(2)	AT1G10130	84.302	0.0	896

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60421g00001	K05853		-	gmx:100783509	962.214