Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00078 ATGGATTCAAGTGATCATCATCAGCACCACCAACAACAACAACCCAAACTCCCACCCGGATTCCGGTTCCACCCAACAGACGAAGAACTCATCGTTCACTACCTCAAGAGGAAAGCATCCTCTGCTCCTCTTCCAGTCGCCATCATCGCCGATGTTGATCTCTACAAGTTCGACCCGTGGGAGCTCCCAAGTAAGGCGACGTTTGGGGAGCAAGAGTGGTATTTCTTTAGCCCAAGGGATAGAAAGTACCCGAATGGGGCTCGGCCAAACAGGGCAGCTACCTCTGGGTATTGGAAAGCCACCGGAACTGATAAGCCTATTCTTGCATCCCATGGCCAACACAGAGTTGGTGTCAAGAAAGCTCTTGTTTTCTATGGCGGCAAGCCTCCTAAAGGAGTCAAAACCAATTGGATCATGCATGAGTATCGCCTCACTGATAATCATAATCATCATCATCACCTTCCTTCCACCAATAATAACAAGAAGAATTCCTTGAGGCTTGATGATTGGGTGCTGTGCCGAATATATAAGAAAAGCAACAGAACAGCGTTGATGGAGCATCATGACGACGATGACGATGATAATAAGGATCGGCTTTCCGCGGAAACAACAAGTATGATAGAAACCATGTCATCATCAATGGCTAACAACAACACGTGTCACAATTCTAAGCCCACAACACCCGGTTATGGACCATTGGTGCTTGAAAACGTAGACAACTTGTTCGATGGAGGATTCCTAGCTGCTGATCACCAACAAGGTAATAACTTGCCAATGAAGAGGCCAGTGGTGAACATGAATTCGCAGTTTTGGAATGATACAAGTGCTTGTTCTTCAAGCAAGAGGCTCCGTTGTGATCTTAATAACACTAATAATAATAATAATAGTGTAGCTGATGATGAGGATAACAGTTCCTTTGTTTCACTGCTTAGCCAGCTTCCTCATCATACTAACAATGCTTCTTCTCTTCTTGCCCCTCCTCTTCCTGATGGTCTTTTCAGGCAACACTTTCAACTTCAGACCATTAATTGGAACTTCTAA 1041 0.4496 MDSSDHHQHHQQQQPKLPPGFRFHPTDEELIVHYLKRKASSAPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASHGQHRVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDNHNHHHHLPSTNNNKKNSLRLDDWVLCRIYKKSNRTALMEHHDDDDDDNKDRLSAETTSMIETMSSSMANNNTCHNSKPTTPGYGPLVLENVDNLFDGGFLAADHQQGNNLPMKRPVVNMNSQFWNDTSACSSSKRLRCDLNNTNNNNNSVADDEDNSSFVSLLSQLPHHTNNASSLLAPPLPDGLFRQHFQLQTINWNF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00078 346 Gene3D NAC domain 26 183 IPR036093 GO:0003677|GO:0006355
Stsc60420g00078 346 PANTHER NAC TRANSCRIPTION FACTOR 56 17 218 - -
Stsc60420g00078 346 SUPERFAMILY NAC domain 7 178 IPR036093 GO:0003677|GO:0006355
Stsc60420g00078 346 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60420g00078 346 ProSiteProfiles NAC domain profile. 17 178 IPR003441 GO:0003677|GO:0006355
Stsc60420g00078 346 FunFam NAC transcription factor 56 26 183 - -
Stsc60420g00078 346 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00078 Stsc-Chr60420 371700 373159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00078 1 344 NAC Transcription Factor Family AT3G15510 50.270 2.92e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60420g00078 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00078 - - aip:107624204 478.018